https://github.com/bruvduroiu/rnn-protein-structure
Using Recurrent Neural Networks to predict secondary protein structure
https://github.com/bruvduroiu/rnn-protein-structure
cnn gru protein-structure python rnn tensorflow
Last synced: about 2 months ago
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Using Recurrent Neural Networks to predict secondary protein structure
- Host: GitHub
- URL: https://github.com/bruvduroiu/rnn-protein-structure
- Owner: bruvduroiu
- Created: 2018-05-12T21:33:34.000Z (about 8 years ago)
- Default Branch: master
- Last Pushed: 2018-05-14T17:23:09.000Z (about 8 years ago)
- Last Synced: 2025-07-30T15:30:33.714Z (11 months ago)
- Topics: cnn, gru, protein-structure, python, rnn, tensorflow
- Language: Python
- Size: 34.2 KB
- Stars: 0
- Watchers: 1
- Forks: 1
- Open Issues: 0
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Metadata Files:
- Readme: README.md
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README
# Predicting Protein Secondary Structure using RNN & CNN
Model tested on the [CB513 dataset](https://www.princeton.edu/~jzthree/datasets/ICML2014/).
Note: This code is optimised to run on Tensorflow version 1.3.0.
## Motivation
To build a RNN-based neural network model capable of predicting the secondary structure of proteins based on their amino-acid chains.
## Model architecture
TODO
## Results
TODO
This repository represents the author's submission for COMP3212: Computational Biology course at the [University of Southampton](https://www.ecs.soton.ac.uk)