https://github.com/bruvellu/3d-tutorial
Tutorial on how to visualize 3D data in Fiji using built-in tools and 3Dscript
https://github.com/bruvellu/3d-tutorial
3d 3d-visualization 3dscript fiji imagej tutorial
Last synced: 13 days ago
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Tutorial on how to visualize 3D data in Fiji using built-in tools and 3Dscript
- Host: GitHub
- URL: https://github.com/bruvellu/3d-tutorial
- Owner: bruvellu
- License: cc-by-4.0
- Created: 2025-12-24T16:49:55.000Z (about 1 month ago)
- Default Branch: main
- Last Pushed: 2025-12-30T16:33:06.000Z (27 days ago)
- Last Synced: 2026-01-07T19:52:11.291Z (19 days ago)
- Topics: 3d, 3d-visualization, 3dscript, fiji, imagej, tutorial
- Language: HTML
- Homepage: https://bruvellu.github.io/3d-tutorial/
- Size: 100 MB
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Zenodo: .zenodo.json
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README
# 🧊 Visualization of 3D data in Fiji using built-in tools and 3Dscript
This tutorial shows different approaches to visualize 3D microscopy data in [Fiji](https://fiji.sc). It provides a quick introduction to some of the bundled tools such as [Orthogonal Views](https://imagej.net/imaging/z-functions#orthogonal-views), [Volume Viewer](https://imagej.net/imaging/z-functions#volume-viewer), [3D Viewer](https://imagej.net/plugins/3d-viewer/), and [BigDataViewer](https://imagej.net/plugins/bdv/), and a more in-depth explanation of the plugin [3Dscript](https://bene51.github.io/3Dscript/).
## Getting started
The tutorial is available online at [bruvellu.github.io/3d-tutorial](https://bruvellu.github.io/3d-tutorial/).
### Offline usage
- Download the latest archive from GitHub ([here](https://github.com/bruvellu/3d-tutorial/archive/refs/heads/main.zip)) or Zenodo ([here](https://doi.org/10.5281/zenodo.18070016))
- Unzip the archive in your working directory
- Open the file `3d-tutorial.html` on your browser
## Citation
Vellutini, B. C. (2026). Visualization of 3D data in Fiji using built-in tools and 3Dscript. Zenodo.
## License
This tutorial is available under a [Creative Commons Attribution 4.0 International License](http://creativecommons.org/licenses/by/4.0/).