https://github.com/cameronraysmith/perturbvelo
https://github.com/cameronraysmith/perturbvelo
Last synced: 7 months ago
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- Host: GitHub
- URL: https://github.com/cameronraysmith/perturbvelo
- Owner: cameronraysmith
- License: agpl-3.0
- Created: 2023-02-09T04:13:32.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2024-05-21T13:40:20.000Z (almost 2 years ago)
- Last Synced: 2025-04-22T17:54:33.463Z (11 months ago)
- Size: 39.1 KB
- Stars: 1
- Watchers: 1
- Forks: 3
- Open Issues: 2
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: docs/contributing.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
Awesome Lists containing this project
README
# perturbvelo
[![Tests][badge-tests]][link-tests]
[![Documentation][badge-docs]][link-docs]
[badge-tests]: https://img.shields.io/github/actions/workflow/status/pinellolab/perturbvelo/test.yaml?branch=main
[link-tests]: https://github.com/pinellolab/perturbvelo/actions/workflows/test.yml
[badge-docs]: https://img.shields.io/readthedocs/perturbvelo
Probabilistic model of RNA metabolism perturbation response
## Getting started
Please refer to the [documentation][link-docs]. In particular, the
- [API documentation][link-api].
## Installation
You need to have Python 3.8 or newer installed on your system. If you don't have
Python installed, we recommend installing [Mambaforge](https://github.com/conda-forge/miniforge#mambaforge).
There are several alternative options to install perturbvelo:
1. Install the latest development version:
```bash
pip install git+https://github.com/pinellolab/perturbvelo.git@main
```
## Release notes
See the [changelog][changelog].
## Contact
For questions and help requests, you can reach out in the [scverse discourse][scverse-discourse].
If you found a bug, please use the [issue tracker][issue-tracker].
## Citation
> t.b.a
[scverse-discourse]: https://discourse.scverse.org/
[issue-tracker]: https://github.com/pinellolab/perturbvelo/issues
[changelog]: https://perturbvelo.readthedocs.io/latest/changelog.html
[link-docs]: https://perturbvelo.readthedocs.io
[link-api]: https://perturbvelo.readthedocs.io/latest/api.html