https://github.com/carbocation/traceoverlay
Image annotation
https://github.com/carbocation/traceoverlay
Last synced: 5 months ago
JSON representation
Image annotation
- Host: GitHub
- URL: https://github.com/carbocation/traceoverlay
- Owner: carbocation
- License: other
- Created: 2019-12-31T18:39:01.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2025-03-03T18:34:13.000Z (over 1 year ago)
- Last Synced: 2025-03-03T19:35:22.656Z (over 1 year ago)
- Language: Go
- Size: 15.5 MB
- Stars: 3
- Watchers: 4
- Forks: 0
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE.txt
Awesome Lists containing this project
README
# TraceOverlay
`go get github.com/carbocation/traceoverlay`
## Purpose
TraceOverlay is a tool for labeling pixels within an image with semantically
meaningful labels (semantic segmentation). The tool was written to create
training data for aortic segmentation in the following manuscript:
> Pirruccello, J.P., Chaffin, M.D., Chou, E.L. *et al*. Deep learning enables genetic analysis of the human thoracic aorta. *Nat Genet* 54, 40–51 (2022). https://doi.org/10.1038/s41588-021-00962-4
## Installation
```sh
cd cmd/traceoverlay
go install
cd ../../
```
## Demos
Demo config files have relative paths that will only work if run from this
folder (the same folder as this README).
### Running the basic demo
```sh
traceoverlay -config demo/basic/config.json
```
Then navigate in your browser to http://localhost:9019
### Running the advanced demo
```sh
traceoverlay -config demo/advanced/config.json
```
Then navigate in your browser to http://localhost:9019
The advanced demo uses a `manifest.tsv` file to specify which images should be
listed (rather than listing all images in a folder).
### Demo image licensing
Note: images are used with permission from the "[Pexels
License](https://www.pexels.com/photo-license/)" from
https://www.pexels.com/photo/christmas-cookies-on-tray-3370704/
## Output
Each traced overlay is output as the input filename with `.mask.png` appended.
## Screenshots
