https://github.com/cbg-ethz/geneaccord

GeneAccord: An R package to detect patterns of mutual exclusivity and co-occurrence on the clone level in a cohort of cancer patients
https://github.com/cbg-ethz/geneaccord

cancer clonal cooccurrence exclusivity mutual

Last synced: 6 months ago
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GeneAccord: An R package to detect patterns of mutual exclusivity and co-occurrence on the clone level in a cohort of cancer patients

• Host: GitHub
• URL: https://github.com/cbg-ethz/geneaccord
• Owner: cbg-ethz
• License: gpl-3.0
• Created: 2018-03-07T09:21:36.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2021-09-10T09:56:46.000Z (about 4 years ago)
• Last Synced: 2024-08-09T00:21:43.186Z (about 1 year ago)
• Topics: cancer, clonal, cooccurrence, exclusivity, mutual
• Language: R
• Homepage:
• Size: 2.96 MB
• Stars: 2
• Watchers: 4
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# GeneAccord #

This R package has functions to detect clonal exclusivity or co-occurrence patterns of altered genes or pathways in a cohort of cancer patients. Such clonally exclusive gene pairs may uncover synergies between co-existing clones.

The file geneAccord_AML.R reads in the data from the AML cohort and runs the three different GeneAccord tests on the data.

### Contacts ###

Jack Kuipers ( jack.kuipers __ bsse.ethz.ch )