https://github.com/cdcgov/flu-nursing-home-model
https://github.com/cdcgov/flu-nursing-home-model
cdc-influenza-division ncird ncird-id
Last synced: about 1 year ago
JSON representation
- Host: GitHub
- URL: https://github.com/cdcgov/flu-nursing-home-model
- Owner: CDCgov
- License: apache-2.0
- Created: 2023-10-31T13:27:30.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2025-02-18T09:07:34.000Z (over 1 year ago)
- Last Synced: 2025-04-13T00:44:55.548Z (about 1 year ago)
- Topics: cdc-influenza-division, ncird, ncird-id
- Language: R
- Homepage:
- Size: 55.7 KB
- Stars: 1
- Watchers: 5
- Forks: 5
- Open Issues: 3
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
## Overview
This repository contains code required to reproduce results from the following paper:
SE Morris\*, CM Zipfel\*, K Peer, ZJ Madewell, S Brenner, S Garg, P Paul, RB Slayton, M Biggerstaff. Modeling the impacts of antiviral prophylaxis strategies in mitigating seasonal influenza outbreaks in nursing homes. *Clinical Infectious Diseases* 2023; DOI 10.1093/cid/ciad764.
\*Contributed equally
There are no original data associated with this work.
The findings and conclusions of this report are those of the authors and do not necessarily represent the official position of the Centers for Disease Control and Prevention.
### Quick-start guide
Scripts to reproduce each figure are located in `rscripts/`.
Equations and parameters for the baseline model are given in `rscripts/eqns.R` and `rscripts/parameters.R`, respectively.
### Additional information
Questions can be directed to Sinead Morris (run7@cdc.gov) or Casey Zipfel (ruv5@cdc.gov).
## Public Domain Standard Notice
This repository constitutes a work of the United States Government and is not
subject to domestic copyright protection under 17 USC § 105. This repository is in
the public domain within the United States, and copyright and related rights in
the work worldwide are waived through the [CC0 1.0 Universal public domain dedication](https://creativecommons.org/publicdomain/zero/1.0/).
All contributions to this repository will be released under the CC0 dedication. By
submitting a pull request you are agreeing to comply with this waiver of
copyright interest.
## License Standard Notice
The repository utilizes code licensed under the terms of the Apache Software
License and therefore is licensed under ASL v2 or later.
This source code in this repository is free: you can redistribute it and/or modify it under
the terms of the Apache Software License version 2, or (at your option) any
later version.
This source code in this repository is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE. See the Apache Software License for more details.
You should have received a copy of the Apache Software License along with this
program. If not, see http://www.apache.org/licenses/LICENSE-2.0.html
The source code forked from other open source projects will inherit its license.
## Privacy Standard Notice
This repository contains only non-sensitive, publicly available data and
information. All material and community participation is covered by the
[Disclaimer](https://github.com/CDCgov/template/blob/master/DISCLAIMER.md)
and [Code of Conduct](https://github.com/CDCgov/template/blob/master/code-of-conduct.md).
For more information about CDC's privacy policy, please visit [http://www.cdc.gov/other/privacy.html](https://www.cdc.gov/other/privacy.html).
## Contributing Standard Notice
Anyone is encouraged to contribute to the repository by [forking](https://help.github.com/articles/fork-a-repo)
and submitting a pull request. (If you are new to GitHub, you might start with a
[basic tutorial](https://help.github.com/articles/set-up-git).) By contributing
to this project, you grant a world-wide, royalty-free, perpetual, irrevocable,
non-exclusive, transferable license to all users under the terms of the
[Apache Software License v2](http://www.apache.org/licenses/LICENSE-2.0.html) or
later.
All comments, messages, pull requests, and other submissions received through
CDC including this GitHub page may be subject to applicable federal law, including but not limited to the Federal Records Act, and may be archived. Learn more at [http://www.cdc.gov/other/privacy.html](http://www.cdc.gov/other/privacy.html).
## Records Management Standard Notice
This repository is not a source of government records, but is a copy to increase
collaboration and collaborative potential. All government records will be
published through the [CDC web site](http://www.cdc.gov).
## Additional Standard Notices
Please refer to [CDC's Template Repository](https://github.com/CDCgov/template)
for more information about [contributing to this repository](https://github.com/CDCgov/template/blob/master/CONTRIBUTING.md),
[public domain notices and disclaimers](https://github.com/CDCgov/template/blob/master/DISCLAIMER.md),
and [code of conduct](https://github.com/CDCgov/template/blob/master/code-of-conduct.md).