https://github.com/clavellab/maldipickrgui

Workflow template to dereplicate and cherry-pick mass spectrometry spectraAn interactive interface to run reproducible workflow to dereplicate and cherry-pick mass spectrometry spectra with the 'maldipickr' package.
https://github.com/clavellab/maldipickrgui

Last synced: about 2 months ago
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Workflow template to dereplicate and cherry-pick mass spectrometry spectraAn interactive interface to run reproducible workflow to dereplicate and cherry-pick mass spectrometry spectra with the 'maldipickr' package.

• Host: GitHub
• URL: https://github.com/clavellab/maldipickrgui
• Owner: ClavelLab
• License: gpl-3.0
• Created: 2023-12-11T12:17:48.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2023-12-18T09:42:21.000Z (about 1 year ago)
• Last Synced: 2023-12-18T10:55:59.391Z (about 1 year ago)
• Language: R
• Size: 81.1 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.Rmd
  • License: LICENSE.md
  • Code of conduct: CODE_OF_CONDUCT.md

Awesome Lists containing this project

README

        
---

output: github_document

---

```{r, include = FALSE}

knitr::opts_chunk$set(

  collapse = TRUE,

  comment = "#>",

  fig.path = "man/figures/README-",

  out.width = "100%"

)

```

# maldipickrGUI

[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)

The goal of `{maldipickrGUI}` is to provide an interactive interface to run reproducible workflow to dereplicate and cherry-pick mass spectrometry spectra using the [`{maldipickr}`](https://cran.r-project.org/package=maldipickr), in order to reduce the redundancy of bacterial isolates.

The interface is a [`{shiny}`](https://cran.r-project.org/package=shiny) application, built using the robust [`{golem}`](https://cran.r-project.org/package=golem) framework.

Reproducible workflows are created using [`{targets}`](https://docs.ropensci.org/targets/).

## Installation

You can install the development version of `{maldipickrGUI}` using

the following command in R:

```{r install_github, eval = FALSE}

remotes::install_github("ClavelLab/maldipickrGUI")

```

## Code of Conduct

Please note that the `{maldipickrGUI}` project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/1/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.