https://github.com/cmdcolin/jbrowse_segmentcnv
https://github.com/cmdcolin/jbrowse_segmentcnv
Last synced: 10 months ago
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- Host: GitHub
- URL: https://github.com/cmdcolin/jbrowse_segmentcnv
- Owner: cmdcolin
- Created: 2020-06-02T21:14:30.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2022-03-26T20:10:15.000Z (over 4 years ago)
- Last Synced: 2025-01-15T08:44:55.130Z (over 1 year ago)
- Language: JavaScript
- Size: 217 KB
- Stars: 1
- Watchers: 3
- Forks: 0
- Open Issues: 5
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Metadata Files:
- Readme: README.md
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README
# segmentcnv
A JBrowse plugin for plotting SEG files from GDC API or similar
## Track options
* urlTemplate - a GDC link to a .seg.txt file
## Screenshot

Figure. Wiggle track display of raw seg.txt CNV data from the GDC repository
## Installation
Clone the repository to the jbrowse plugins subdirectory and name it SegmentCNV
git clone https://github.com/cmdcolin/jbrowse_segmentcnv SegmentCNV
Then add the plugin to your configuration, e.g. "plugins": ["SegmentCNV"]
See http://gmod.org/wiki/JBrowse_FAQ#How_do_I_install_a_plugin for details