https://github.com/cmdcolin/jbrowse_segmentcnv

https://github.com/cmdcolin/jbrowse_segmentcnv

Last synced: 10 months ago
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• Host: GitHub
• URL: https://github.com/cmdcolin/jbrowse_segmentcnv
• Owner: cmdcolin
• Created: 2020-06-02T21:14:30.000Z (about 6 years ago)
• Default Branch: master
• Last Pushed: 2022-03-26T20:10:15.000Z (over 4 years ago)
• Last Synced: 2025-01-15T08:44:55.130Z (over 1 year ago)
• Language: JavaScript
• Size: 217 KB
• Stars: 1
• Watchers: 3
• Forks: 0
• Open Issues: 5
• Metadata Files:
  • Readme: README.md

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README

          
# segmentcnv

A JBrowse plugin for plotting SEG files from GDC API or similar

## Track options

* urlTemplate - a GDC link to a .seg.txt file

## Screenshot

![](img/1.png)

Figure. Wiggle track display of raw seg.txt CNV data from the GDC repository

## Installation

Clone the repository to the jbrowse plugins subdirectory and name it SegmentCNV

    git clone https://github.com/cmdcolin/jbrowse_segmentcnv SegmentCNV

Then add the plugin to your configuration, e.g. "plugins": ["SegmentCNV"]

See http://gmod.org/wiki/JBrowse_FAQ#How_do_I_install_a_plugin for details