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https://github.com/cmorganl/MICB405-Metagenomics
A metagenome annotation workflow for UBC's Microbiology 405 course, Bioinformatics
https://github.com/cmorganl/MICB405-Metagenomics
bioinformatics metagenomics microbial-genomics
Last synced: about 1 month ago
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A metagenome annotation workflow for UBC's Microbiology 405 course, Bioinformatics
- Host: GitHub
- URL: https://github.com/cmorganl/MICB405-Metagenomics
- Owner: cmorganl
- Created: 2017-11-10T20:28:59.000Z (about 7 years ago)
- Default Branch: master
- Last Pushed: 2018-11-28T00:10:53.000Z (about 6 years ago)
- Last Synced: 2024-08-03T23:12:33.221Z (5 months ago)
- Topics: bioinformatics, metagenomics, microbial-genomics
- Language: HTML
- Homepage:
- Size: 9.5 MB
- Stars: 4
- Watchers: 5
- Forks: 9
- Open Issues: 0
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Metadata Files:
- Readme: README.md
Awesome Lists containing this project
- awesome-bioinformatics-education - Metagenome annotation workflow for UBC's MICB405 Microbial Bioinformatics course
README
# MICB405-Metagenomics
A metagenome annotation workflow for UBC's MICB405 Microbial Bioinformatics course
## Outline
This is a central repository for mutliple student-led projects analyzing metagenomic data.
Data used for this project is from Saanich Inlet, a seasonally-anoxic fjord on the coast of Vancouver Island British Columbia that provides a model ecosystem for studying microbial commuity responses to ocean deoxygenation. These data are described further in the series of Scientific Data publications ([geochemical data](https://www.nature.com/articles/sdata2017159) and [multi-omic data](https://www.nature.com/articles/sdata2017160)).
## References
1. Torres-Beltrán, M., Hawley, A. K., Capelle, D., Zaikova, E., Walsh, D. A., Mueller, A., ... & Finke, J. (2017). A compendium of geochemical information from the Saanich Inlet water column. Scientific Data, 4, sdata2017159.
2. Hawley, A. K., Torres-Beltrán, M., Zaikova, E., Walsh, D. A., Mueller, A., Scofield, M., ... & Shevchuk, O. (2017). A compendium of multi-omic sequence information from the Saanich Inlet water column. Scientific Data, 4, sdata2017160.