awesome-bioinformatics-education
resources for bioinformatics education
https://github.com/lskatz/awesome-bioinformatics-education
Last synced: 5 days ago
JSON representation
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Specific tools or topics
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Microbial bioinformatics
- Book: Introduction to Bioinformatics in Microbiology
- Book: Introduction to Bioinformatics in Microbiology
- Book: Introduction to Bioinformatics in Microbiology
- Book: Introduction to Bioinformatics in Microbiology
- Book: Introduction to Bioinformatics in Microbiology
- Book: Introduction to Bioinformatics in Microbiology
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Full unaccredited courses
- Workshop in microbial metagenome analysis at Michigan State University
- Statistics training from Quadram Institute
- Taming the BEAST (molecular clock analysis)
- Perfect bacterial genome tutorial
- Tools for RNAseq Analyses
- Hi-C with Chromosomal Conformation Course
- GWAS Tutorial
- Analysis of single cell RNA-seq data course
- Metagenome annotation workflow for UBC's MICB405 Microbial Bioinformatics course
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Phylogenetics or phylogenomics
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Galaxy
- Galaxy Training: Genome Assembly of MRSA using MinION Data
- One-health tag on Galaxy Training Site - Pathogen Bioinformatics
- Galaxy-wide Tutorial Site
- Repository of ~140 hours of Galaxy Lectures+Tutorials - under CC-BY license that can be embedded into your [Blackboard/Moodle/etc.](https://gallantries.github.io/video-library/videos/galaxy-interface/ncbi-sarf/slides/) (see button at bottom)
- Smörgåsbord 2021 (Global Galaxy Course)
- Smörgåsbord 2022 (Tapas)
- Smörgåsbord 2023
- Genomic data analysis
- Metagenomics
- Genome Annotation
- Full List
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LLMs
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Genomic epidemiology
- Book: R for applied epidemiology and public health
- Book: An applied genomic epidemiological handbook
- Centre for Genomic Pathogen Surveillance digital epidemiology workshop - Really nice integrated exercises, using EpiCollect, DataFlo, PathogenWatch, Microreact.
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Statistics
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Genomic data analysis
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Full courses
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Full accredited courses
- Bioinformatics Workbook - Takes you from unix basics and the HPC all the way through advanced concepts. These concepts include computational like `bioawk` and containers, project management like GitHub and Slack, and all sorts of bioinformatics topics.
- Computational biology
- Bioinformatics and Proteomics
- Foundations of Computational and Systems Biology
- HarvardX Biomedical Data Science Open Online Training
- Titus Brown's class materials
- Meren Lab's tutorials (central tab)
- Astrobio Mike's tutorials
- Ben Langmead's teaching materials
- Free code camp
- DataCamp
- Udemy
- Python Basics
- Data Structures
- Object Oriented Programming
- Applied Computational Genomics Course at UU: Sprint 2022
- SciLifeLab course listings
- Andrea Telatin's tutorials
- Ben Langmead's teaching materials
- HarvardX Biomedical Data Science Open Online Training
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Full unaccredited courses
- Pathogen genomics data analysis course - Conor Meehan
- MMB DTP Training - A problem-based learning curriculum for the "Microbes, Microbiomes and Bioinformatics" doctoral training program.
- Pathogen Bioinformatics Workshop held at SANBI
- Bioinformatics for Genomic Epidemiology - SANBI March 2024
- WCS AMR Africa 24 - NICD March 2024
- Computational Genomics and Bioinformatics Class
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Accredited course packages
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Further reading
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Uncategorized
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Statistics
- Glittr - Git repositories with bioinformatics training material.
- 5-day OUCRU-MORU bioinformatics fundamentals workshop
- Book: Fundamentals of Data Visualization
- Version Control with Git
- Version Control using Git and GitHub
- List of genome visualisation tools
- List of training materials at SIB
- List of training materials at GitHub.com/crazyhottommy
- Book: Computational Genomics with R
- Data science in Python - course materials
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Hands on
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Full unaccredited courses
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Programming Languages
Categories
Sub Categories