https://hobrien.github.io/RNAseqTools/

Descriptions and Benchmarks for RNAseq tools
https://hobrien.github.io/RNAseqTools/

Last synced: 6 days ago
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Descriptions and Benchmarks for RNAseq tools

• Host: GitHub
• URL: https://hobrien.github.io/RNAseqTools/
• Owner: hobrien
• License: cc-by-4.0
• Created: 2017-01-16T14:37:40.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2018-03-27T11:00:10.000Z (over 6 years ago)
• Last Synced: 2024-08-03T23:12:32.643Z (4 months ago)
• Language: HTML
• Size: 822 KB
• Stars: 0
• Watchers: 2
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

• awesome-bioinformatics-education - Tools for RNAseq Analyses

README

        
## Tools for RNAseq Analyses

This is basically a list of resources that I have put together as a reference for my own research, but I'm publishing it here in case it might help others

### Methods

- [Review papers]({{ site.baseurl }}/Methods/Reviews)

- [De Novo Transcriptome Assembly]({{ site.baseurl }}/Methods/DeNovo)

- [Alignment Tools]({{ site.baseurl }}/Methods/Alignment)

- [Reference-Based Transcript Identification]({{ site.baseurl }}/Methods/TranscriptDiscovery)

- [Quantification Tools]({{ site.baseurl }}/Methods/Quantification)

- [Normalization Methods]({{ site.baseurl }}/Methods/Normalization)

- [Batch Correction]({{ site.baseurl }}/Methods/BatchCorrection)

- [Differential Expression]({{ site.baseurl }}/Methods/DE)

- [Differential Splicing]({{ site.baseurl }}/Methods/Splicing)

- [eQTL Analyses]({{ site.baseurl }}/Methods/eQTL)

- [Gene-trait Association]({{ site.baseurl }}/Methods/GeneTraitAssociation)

- [Pathway Analyses]({{ site.baseurl }}/Methods/Pathways)

### Other Resources

- [GTEx Publications]({{ site.baseurl }}/Resources/GTExPapers)

- [Brain Gene Expression Resources]({{ site.baseurl }}/Resources/BrainExpression)

### Workflow Tutorials

- [System Configuration]({{ site.baseurl }}/WorkflowTutorial/SystemConfig)

- [Version Control]({{ site.baseurl }}/WorkflowTutorial/GitIntro)

- [Snakemake]({{ site.baseurl }}/WorkflowTutorial/SnakeMake)

- [Tidy R]({{ site.baseurl }}/WorkflowTutorial/TidyR)

- [Databases]({{ site.baseurl }}/WorkflowTutorial/Databases)

- [Shiny]({{ site.baseurl }}/WorkflowTutorial/Shiny)