https://github.com/codebiogenomics/pansam

all rust-samtools combined into a single application
https://github.com/codebiogenomics/pansam

Last synced: 5 months ago
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all rust-samtools combined into a single application

• Host: GitHub
• URL: https://github.com/codebiogenomics/pansam
• Owner: applicativesystem
• License: mit
• Created: 2024-12-09T19:27:37.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2024-12-09T20:22:40.000Z (about 1 year ago)
• Last Synced: 2024-12-09T21:26:35.466Z (about 1 year ago)
• Size: 1000 Bytes
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# pansam

 - all rust-samtools combined into a single application specific for the long read technologies and async threaded.

 

 ![](https://github.com/IBCHgenomic/eVaiutilities/blob/main/logo.png)

 ```

 cargo build

 ```

 

 ```

 Usage: pansam 

 Commands:

  generateid              generate ids for all the samtools id present in the samfile

  generateidrange         generate ids for the specific range in the samtools file

  extractor               extracts the specific ids from the samfile

  viewer                  view the color coded reads for the specific region

  tag-viewer              view the colour coded regions for the tags

  sam-up-down-align-view  upstream and downstream regions,prankaligner and visualization of the alignments

  sam-up-down-align       allows for the extraction of the upstream and downstream regions from the samfile

  filter                  allows for the filtering of the samfile

  filter-range            allows for the filtering of the samfile with specified range

  help                    Print this message or the help of the given subcommand(s)

 Options:

  -h, --help     Print help

  -V, --version  Print version

 ``` 

Gaurav Sablok Instytut Chemii Bioorganicznej Polskiej Akademii Nauk ul. Noskowskiego 12/14 | 61-704, Poznań Poland