https://github.com/codecreatede/rust-nuc-iter

datastructure rustlang faster iteration for genome, short and long reads
https://github.com/codecreatede/rust-nuc-iter

bioinformatics genome-classification genome-informatics rust-crate rust-lang sequence-classification sequencing-data

Last synced: 11 months ago
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datastructure rustlang faster iteration for genome, short and long reads

• Host: GitHub
• URL: https://github.com/codecreatede/rust-nuc-iter
• Owner: sciencegenome
• License: mit
• Created: 2024-10-21T19:23:40.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2025-01-15T20:27:53.000Z (about 1 year ago)
• Last Synced: 2025-01-24T19:37:21.464Z (about 1 year ago)
• Topics: bioinformatics, genome-classification, genome-informatics, rust-crate, rust-lang, sequence-classification, sequencing-data
• Language: Rust
• Homepage:
• Size: 7.38 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

Awesome Lists containing this project

README

          
# rust-nuc-iter

- A kmer origin finding faster than the recent implementation of the recent implementation. Back to sequences: Find the origin of 𝑘-mers DOI: 10.21105/joss.07066.

- I implemented the rust async programming to index the kmer first over a window size and then use that to make the set of the kmers, so that you have less search space and using that to search the kmer in the file provided

- It only searchers for the unique hashes and their location. to make it even faster.It support genome and short and long illumina reads.

- adding docker and usage.

Gaurav Sablok