https://github.com/combat-tb/combat-tb-neodb

:whale: combatTB Neo4j Database
https://github.com/combat-tb/combat-tb-neodb

apoc bioinformatics cdc1551 docker graph-database h37rv neo4j tuberculosis

Last synced: 21 days ago
JSON representation

:whale: combatTB Neo4j Database

• Host: GitHub
• URL: https://github.com/combat-tb/combat-tb-neodb
• Owner: COMBAT-TB
• License: gpl-3.0
• Created: 2017-09-12T10:38:47.000Z (over 7 years ago)
• Default Branch: master
• Last Pushed: 2021-08-17T05:43:10.000Z (over 3 years ago)
• Last Synced: 2024-11-08T14:13:46.653Z (2 months ago)
• Topics: apoc, bioinformatics, cdc1551, docker, graph-database, h37rv, neo4j, tuberculosis
• Language: HTML
• Homepage: https://combattb.org/combat-tb-neodb
• Size: 20.5 MB
• Stars: 1
• Watchers: 2
• Forks: 1
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# [Combat-TB-NeoDB](https://neodb.sanbi.ac.za)

[![Build Status](https://travis-ci.org/COMBAT-TB/combat-tb-neodb.svg?branch=master)](https://travis-ci.org/COMBAT-TB/combat-tb-neodb) [![Documentation Status](https://readthedocs.org/projects/combat-tb-db/badge/?version=latest)](https://combat-tb-db.readthedocs.io/en/latest/?badge=latest) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1219127.svg)](https://doi.org/10.5281/zenodo.1219127)

**[Combat-TB](https://combattb.org/)-NeoDB: fostering Tuberculosis research through integrative analysis using graph database technologies.**

[Combat-TB](https://combattb.org/)-NeoDB is an integrated _M.tuberculosis (M.tb)_ ‘omics’ knowledge-base. NeoDB is based on Neo4j and enables researchers to execute complex federated queries by linking well-known, curated and widely used _M.tb_ data resources, and supplementary Tuberculosis variants data from published literature. [Combat-TB](https://combattb.org/)-NeoDB was created by binding the labeled property graph model to a consensus-controlled ontology.

**A publicly accessible instance is available at**: [https://neodb.sanbi.ac.za](https://neodb.sanbi.ac.za)

## Purpose

To enable _M.tb_ researchers to execute *ad hoc* complex federated queries with the

ability to explore data interactively by linking well-known, curated and widely used _M.tb_ data resources, and supplementary TB variants data from published literature.

## Installation

To avoid the trouble of environment setup,

[running the database in a Docker container](https://combattb.org/combat-tb-neodb/installation/#using-docker) is highly recommended.

Otherwise, a manual installation guide can be found [here](https://combattb.org/combat-tb-neodb/installation/#standalone).

## Graph Model

![NeoDB_MODEL](docs/images/neodbschema.png)

## Issues

Please report any issues [here](https://github.com/COMBAT-TB/combat-tb-neodb/issues).