https://github.com/compomics/mascotdatfile

Java API for MS/MS search results by Mascot (Matrix Science).
https://github.com/compomics/mascotdatfile

bioinformatics mascot proteomics

Last synced: about 2 months ago
JSON representation

Java API for MS/MS search results by Mascot (Matrix Science).

• Host: GitHub
• URL: https://github.com/compomics/mascotdatfile
• Owner: CompOmics
• Created: 2015-04-01T09:32:44.000Z (about 11 years ago)
• Default Branch: master
• Last Pushed: 2021-10-12T10:15:02.000Z (over 4 years ago)
• Last Synced: 2025-09-10T05:09:50.660Z (7 months ago)
• Topics: bioinformatics, mascot, proteomics
• Language: Java
• Homepage: http://compomics.github.io/projects/mascotdatfile.html
• Size: 29.8 MB
• Stars: 3
• Watchers: 17
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE-2.0.txt

Awesome Lists containing this project

README

          
# MascotDatfile

 * [Project Description](#project-description)

 * [Download](#download)

 * [Usage](#usage)

 * [Project Support](#project-support)

----

## Project Description

Proteomics bioinformatics deals with organising and analysing large amounts of information generated during proteomic analyses. The vast amounts of mass spectrometry data are typically interpreted by database search algorithms such as Mascot Server from [Matrix Science](http://www.matrixscience.com/). The results of such a search are presented in an user-friendly HTML page, yet, this is inconvenient when further processing is required. Therefore we have developed the *MascotDatfile* library which transforms a flat file into a dynamic object model.

*Helsens et al. MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results. Proteomics (2007) vol. 7 (3) pp. 364-6 ([PUBMED ID:17203510](http://www.ncbi.nlm.nih.gov/pubmed/17203510))*

[Go to top of page](#mascotdatfile)

----

## Download

| Download | Version | Release info |

|:--:|:--:|:--:|

| [![download](https://github.com/compomics/mascotdatfile/wiki/images/download_button.png)](https://genesis.ugent.be/maven2/com/compomics/mascotdatfile/3.6.1/mascotdatfile-3.6.1.zip) | *3.6.1 - All platforms* |    [Release notes](https://github.com/compomics/mascotdatfile/wiki/ReleaseNotes) |

[Go to top of page](#mascotdatfile)

----

## Usage

See the [wiki](https://github.com/compomics/mascotdatfile/wiki) for additional information on how to setup, run and configure *MascotDatfile*.

[Go to top of page](#mascotdatfile)

----

## Project Support

The *MascotDatfile* project is grateful for the support by:

| Compomics | VIB | Ghent University|

|:--:|:--:|:--:|

| [![compomics](http://genesis.ugent.be/uvpublicdata/image/compomics.png)](http://www.compomics.com) | [![vib](http://genesis.ugent.be/uvpublicdata/image/vib.png)](http://www.vib.be) | [![](http://genesis.ugent.be/uvpublicdata/image/ugent.png)](http://www.ugent.be/en) |

[Go to top of page](#mascotdatfile)

----

| IntelliJ | Netbeans | Java | Maven |

|:--:|:--:|:--:|:--:|

| [![intellij](http://genesis.ugent.be/uvpublicdata/image/icon_IntelliJIDEA.png)](https://www.jetbrains.com/idea/) | [![netbeans](https://netbeans.org/images_www/visual-guidelines/NB-logo-single.jpg)](https://netbeans.org/) | [![java](http://genesis.ugent.be/uvpublicdata/image/java.png)](http://java.com/en/) | [![maven](http://genesis.ugent.be/uvpublicdata/image/maven.png)](http://maven.apache.org/) |

[Go to top of page](#mascotdatfile)