https://github.com/computorg/jds2025-workshop-template

https://github.com/computorg/jds2025-workshop-template

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• Host: GitHub
• URL: https://github.com/computorg/jds2025-workshop-template
• Owner: computorg
• Created: 2025-06-05T13:03:32.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2025-06-06T06:04:26.000Z (about 1 year ago)
• Last Synced: 2025-06-06T07:19:32.207Z (about 1 year ago)
• Language: TeX
• Size: 3.1 MB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# jds2025-workshop-template

[Workshop site](https://computo.sfds.asso.fr/jds2025-workshop/) for the JDS 2025 workshop on reproducible research.

# Template installation

![](img/use-this-template.png)

![](img/create-new-repo.png)

![](img/select-all-branches.png)

![](img/clone-repo.png)

# Quarto render usage 

There are two ways to make the render:

## Using [Apptainer](https://apptainer.org/docs/admin/main/installation.html) containers

First download the container image for your language of choice and your CPU architecture:

All downloads are available on this link :

[https://filesender.renater.fr/?s=download&token=097272f1-f3a6-40ba-98b9-d517e27d2f80](https://filesender.renater.fr/?s=download&token=097272f1-f3a6-40ba-98b9-d517e27d2f80)

### Apptainer usage

```shell

apptainer run --writable-tmpfs  

```

Example for R:

```shell

apptainer run --writable-tmpfs ./jds2025-workshop-R.sif quarto render

```

## Environment installation (for advanced users)

R

: 

```shell

Rscript -e 'install.packages("renv"); renv::restore()'

```

Python/pip

: 

```shell

pip install -r requirements.txt

```

Python/conda (we recommend [micromamba](https://mamba.readthedocs.io/en/latest/installation/micromamba-installation.html))

: 

```shell

conda env create -f environment.yml

```

```shell

quarto add computorg/computo-quarto-extension

```