https://github.com/crsl4/methods-bio-data-workshop
Methods for Biological Data Workshop (UW-Madison)
https://github.com/crsl4/methods-bio-data-workshop
bioinformatics computational-biology data-science
Last synced: 4 months ago
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Methods for Biological Data Workshop (UW-Madison)
- Host: GitHub
- URL: https://github.com/crsl4/methods-bio-data-workshop
- Owner: crsl4
- Created: 2024-01-31T15:33:42.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-12-01T14:57:07.000Z (over 1 year ago)
- Last Synced: 2024-12-01T15:36:44.108Z (over 1 year ago)
- Topics: bioinformatics, computational-biology, data-science
- Homepage: https://crsl4.github.io/methods-bio-data-workshop/
- Size: 5.99 MB
- Stars: 3
- Watchers: 2
- Forks: 2
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# Methods for Biological Data Workshop
This website will host the materials for the "Methods for Biological Data" Workshop.
## Schedule Fall 2024
The workshop in Fall 2024 will take place in Russell 584 the first Thursday of every month 1-2:30pm (except September).
| Date | Speaker | Title | Lecture notes |
| :---: | :---: | :---: |
| October 3 | [Christina Koch](https://wid.wisc.edu/people/christina-koch/) | Advance your research: scale out your computing with [CHTC](https://chtc.cs.wisc.edu/) | [slides](https://docs.google.com/presentation/d/1L6elI8Npk5Eor-t-hvaJ7RI7q-54M8hVJCZ4AetWl84/edit?usp=sharing), [recording](https://youtu.be/AOYOD8F_Ygs) |
| November 7 | [Jacob Steenwyk](https://jlsteenwyk.com/) | Colorblind-friendly and publication-quality data visualization in R | [resources](https://jlsteenwyk.com/resources.html), [recording](https://youtu.be/9ExOjVe7N4o) |
## Schedule Spring 2024
The workshop in Spring 2024 will take place in Russell 584 the first Wednesday of every month 2-3:30pm.
| Date | Speaker | Title | Lecture notes |
| :---: | :---: | :---: |
| February 7 | [Kris Sankaran](https://krisrs1128.github.io/LSLab/) | Simulation in Omics | [slides](https://go.wisc.edu/v4hsh9), [notebook](https://colab.research.google.com/drive/1IyMEQJwkslPzL9FYd5atvyGORqW9IrCI?usp=sharing) |
| March 6 | [Toby Baril](https://tobybaril.github.io) | Annotating Transposable Elements with Earl Grey: A Beginner's Guide | [slides](./sources/uwMadisonWorkshopEarlGrey_participantCopy.pptx), [recording](https://www.youtube.com/watch?v=D4GBld4X4kg) |
| April 3 | [Amy Willis](https://statdivlab.github.io/) | Meaningful comparisons of abundance based on high-throughput sequencing data | [slides](https://drive.google.com/file/d/1wBmpoHzVuMK90HP7K9zx6VH-8XtUXLo7/view?usp=sharing), [radEmu github](https://github.com/statdivlab/radEmu), [r script](https://drive.google.com/file/d/1-81vbFoxBd8NK1q33EMOWBDyyA8WrnoD/view), [recording](https://youtu.be/gIFJpU_QvmA) |
| May 1 | [Zachary Konkel](https://www.linkedin.com/in/konkelzach/) | Democratizing genomics with Mycotools | [mycotools gitlab](https://gitlab.com/xonq/mycotools), [mycotools workshop content](https://github.com/xonq/mycotools/blob/master/test/mycotools_workshop.md), [recording](https://www.youtube.com/watch?v=5FVbRDy-nBU)|
## Meet the organizers
Originally from Mexico City, Claudia Solís-Lemus is an assistant professor at the [Wisconsin Institute for Discovery](https://wid.wisc.edu/) and the [Department of Plant Pathology](https://plantpath.wisc.edu/) at the [University of Wisconsin-Madison](http://www.wisc.edu).
Born and raised in Montreal, Emile Gluck-Thaler is an assistant professor in the Department of Plant Pathology at the University of Wisconsin-Madison and a Discovery Fellow at the Wisconsin Institute for Discovery.
