https://github.com/cthoyt/rorio

Convert the Research Organization Registry (ROR) into an OWL instance ontology
https://github.com/cthoyt/rorio

bibliometrics ror scientometrics

Last synced: 4 days ago
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Convert the Research Organization Registry (ROR) into an OWL instance ontology

• Host: GitHub
• URL: https://github.com/cthoyt/rorio
• Owner: cthoyt
• License: cc0-1.0
• Created: 2023-01-13T18:27:50.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2024-04-24T10:40:12.000Z (8 months ago)
• Last Synced: 2024-10-30T21:51:35.934Z (about 2 months ago)
• Topics: bibliometrics, ror, scientometrics
• Language: Python
• Homepage:
• Size: 98.2 MB
• Stars: 2
• Watchers: 3
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
# ROR in OWL

Similar to the [ORCIDIO](https://github.com/cthoyt/orcidio), which makes an ontology of instances of researchers via

ORCID, this repository houses a script to convert the [Research Organization Registry (ROR)](https://ror.org) into

an ontology of instances of organizations.

The latest version can be downloaded with the following:

| Format         | PURL                              |

|----------------|-----------------------------------|

| OWL RDF/XML    | https://w3id.org/rorio/rorio.owl  |

| OBO Flat File  | https://w3id.org/rorio/rorio.obo  |

| OBO Graph JSON | https://w3id.org/rorio/rorio.json |

![](img/rorio-in-protege.png)

In the screenshot, you can see the `part of`, `has part`, and `located in` relations for the example organization. Unfortunately, Protégé does not have support for navigating partonomies on individuals.

## Build

Install the requirements and run with:

```shell

python -m pip install -r requirements.txt

python build.py

```

## Named Entity Recognition

A [Gilda](https://github.com/gyorilab/gilda) index is generated for usage in named entity recognition (NER)

and named entity normalization (NEN; i.e., grounding). It is available at https://w3id.org/rorio/rorio.gilda.tsv.gz.

It can be used like in:

```python

from urllib.request import urlretrieve

from gilda import Grounder

url = "https://w3id.org/rorio/rorio.gilda.tsv.gz"

path = "rorio.gilda.tsv.gz"

urlretrieve(url, path)

grounder = Grounder(path)

scored_matches = grounder.ground("Rheinische Friedrich-Wilhelms-Universität Bonn")

```

## License

The data downloaded from https://doi.org/10.5281/zenodo.6347574 are licensed under CC0. So is this repo. This is

additionally self-documented in the ontology files.