https://github.com/cumbof/metasbt
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
https://github.com/cumbof/metasbt
bioinformatics genomes metagenome-assembled-genomes metagenomics microbial-genomics sequence-bloom-trees
Last synced: 10 months ago
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A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
- Host: GitHub
- URL: https://github.com/cumbof/metasbt
- Owner: cumbof
- License: mit
- Created: 2022-05-04T00:14:32.000Z (about 4 years ago)
- Default Branch: main
- Last Pushed: 2025-07-07T19:25:30.000Z (11 months ago)
- Last Synced: 2025-07-07T20:58:33.993Z (11 months ago)
- Topics: bioinformatics, genomes, metagenome-assembled-genomes, metagenomics, microbial-genomics, sequence-bloom-trees
- Language: Python
- Homepage:
- Size: 802 KB
- Stars: 9
- Watchers: 2
- Forks: 3
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Citation: CITATION.cff
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README
# MetaSBT
MetaSBT is a scalable framework designed to automatically index microbial genomes and accurately characterize metagenome-assembled genomes using Sequence Bloom Trees.
👉 Get started with MetaSBT by visiting our [official wiki](https://github.com/cumbof/MetaSBT/wiki).
We also maintain a collection of public databases built with MetaSBT from curated sets of microbial genomes. You can explore and use them from the [MetaSBT-DBs](https://github.com/cumbof/MetaSBT-DBs) repository.
> [!NOTE]
> Interested in using MetaSBT or our databases, or building your own private database but lack the necessary computational resources?
> Reach out to us! We’re always open to collaborations.
## 📖 Credits
If you use MetaSBT in your work, please cite:
> _Manuscript in preparation_
## 🤝 Contributing
Long-term discussion and bug reports are maintained via GitHub [Discussions](https://github.com/cumbof/MetaSBT/discussions) and [Issues](https://github.com/cumbof/MetaSBT/issues), while code review is managed via GitHub [Pull Requests](https://github.com/cumbof/MetaSBT/pulls).
Before contributing, please:
1. Check for existing issues or PRs related to your topic;
2. Write clear and concise titles and descriptions;
3. Include steps to reproduce bugs, relevant logs, version info, and other technical details when appropriate.
## 🛠️ Support
Need help?
Open an [Issue](https://github.com/cumbof/MetaSBT/issues) or start a [Discussion](https://github.com/cumbof/MetaSBT/discussions) — we're happy to assist with any questions or technical problems.
Copyright © 2025 [Fabio Cumbo](https://github.com/cumbof), [Daniel Blankenberg](https://github.com/blankenberg). See [LICENSE](https://github.com/cumbof/MetaSBT/blob/main/LICENSE) for additional details.