https://github.com/cumbof/metasbt-dbs
MetaSBT public databases
https://github.com/cumbof/metasbt-dbs
databases metagenome-assembled-genomes metagenomics reference-genomes sequence-bloom-trees
Last synced: 3 months ago
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MetaSBT public databases
- Host: GitHub
- URL: https://github.com/cumbof/metasbt-dbs
- Owner: cumbof
- License: mit
- Created: 2023-03-07T16:53:32.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2025-06-11T21:42:18.000Z (12 months ago)
- Last Synced: 2025-06-11T22:41:34.703Z (12 months ago)
- Topics: databases, metagenome-assembled-genomes, metagenomics, reference-genomes, sequence-bloom-trees
- Homepage:
- Size: 7.94 MB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# MetaSBT Public Databases
📦 A collection of public MetaSBT databases featuring taxonomically organized Sequence Bloom Trees (SBTs) built from curated sets of microbial genomes.
## 🧬 About the Databases
These databases are generated using the [MetaSBT framework](https://github.com/cumbof/MetaSBT).
Each MetaSBT database is a compressed tarball containing Bloom filter representations of microbial genomes, hierarchically organized into SBTs based on their taxonomic information.
To simplify their distribution and installation, MetaSBT provides automated utilities.
📦 [pack](https://github.com/cumbof/MetaSBT/wiki/Available-features#4-pack-pack-a-database-into-a-compressed-tarball): package a database
📂 [unpack](https://github.com/cumbof/MetaSBT/wiki/Available-features#9-unpack-install-a-database): install a packaged database
👉 For detailed usage instructions, and to retrieve the latest list of available public databases, refer to the [MetaSBT documentation](https://github.com/cumbof/MetaSBT/wiki/Available-features).
> [!NOTE]
> Want to use our software and databases, or build a private MetaSBT database but don’t have the necessary compute resources?
> Reach out! We’re always happy to collaborate.
## 🤝 Contributing
Long-term discussion and bug reports are maintained via GitHub [Discussions](https://github.com/cumbof/MetaSBT/discussions) and [Issues](https://github.com/cumbof/MetaSBT/issues) under the [MetaSBT framework repository](https://github.com/cumbof/MetaSBT), while code review is managed via GitHub [Pull Requests](https://github.com/cumbof/MetaSBT/pulls).
Before contributing, please:
1. Check for existing issues or PRs related to your topic;
2. Write clear and concise titles and descriptions;
3. Include steps to reproduce bugs, relevant logs, version info, and other technical details when appropriate.
## 🛠️ Support
Need help?
Open an [Issue](https://github.com/cumbof/MetaSBT/issues) or start a [Discussion](https://github.com/cumbof/MetaSBT/discussions) under the [MetaSBT framework repository](https://github.com/cumbof/MetaSBT) — we're happy to assist with any questions or technical problems.
Copyright © 2025 [Fabio Cumbo](https://github.com/cumbof), [Daniel Blankenberg](https://github.com/blankenberg). See [LICENSE](https://github.com/cumbof/MetaSBT-DBs/blob/main/LICENSE) for additional details.