https://github.com/cytomining/cytominergallery
[Deprecated] A Gallery of Cytominer Vignettes
https://github.com/cytomining/cytominergallery
microscopy profiling vignette
Last synced: 10 months ago
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[Deprecated] A Gallery of Cytominer Vignettes
- Host: GitHub
- URL: https://github.com/cytomining/cytominergallery
- Owner: cytomining
- License: other
- Archived: true
- Created: 2016-09-09T17:00:10.000Z (almost 10 years ago)
- Default Branch: master
- Last Pushed: 2022-07-20T14:55:42.000Z (almost 4 years ago)
- Last Synced: 2025-05-31T11:47:48.045Z (about 1 year ago)
- Topics: microscopy, profiling, vignette
- Language: R
- Homepage: https://cytomining.github.io/cytominergallery/
- Size: 10 MB
- Stars: 1
- Watchers: 2
- Forks: 6
- Open Issues: 5
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
[](https://travis-ci.org/cytomining/cytominergallery)
# cytominer gallery
## Installation
Install [R](https://www.r-project.org) and [RStudio](https://www.rstudio.com/).
Download this [sqlite](https://s3.amazonaws.com/imaging-platform-collaborator/2016_09_09_cytominer_workshop/ljosa_jbiomolscreen_2013.sqlite) file into `~/Downloads` (required by the vignette `single_cell_analysis`).
Install the `cytominergallery` package from GitHub:
```R
# install.packages("devtools")
devtools::install_github("cytomining/cytominergallery", dependencies = TRUE, build_vignettes = TRUE)
```
You may need to do run that again in order to build the vignettes correctly (seems like a bug in `install_github`):
```R
devtools::install_github("cytomining/cytominergallery", dependencies = TRUE, build_vignettes = TRUE, force = TRUE)
```
Occasionally, the `Suggests` dependencies [may not get installed](https://github.com/hadley/devtools/issues/1370), depending on your system, so you'd need to install those explicitly.
Browse vignettes (launches in default browser):
```R
browseVignettes()
```
Search for "Vignettes in package cytominergallery" and click on the link `HTML` to view the vignettes.