https://github.com/danlooo/coabundance
Wrapper around several methods to assess co-abundant taxa in microbial datasets.
https://github.com/danlooo/coabundance
correlation metagenomics
Last synced: 7 months ago
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Wrapper around several methods to assess co-abundant taxa in microbial datasets.
- Host: GitHub
- URL: https://github.com/danlooo/coabundance
- Owner: danlooo
- License: bsd-2-clause
- Created: 2020-12-17T12:21:40.000Z (almost 5 years ago)
- Default Branch: main
- Last Pushed: 2021-01-12T09:45:20.000Z (over 4 years ago)
- Last Synced: 2025-01-25T12:25:05.595Z (9 months ago)
- Topics: correlation, metagenomics
- Language: R
- Homepage: https://danlooo.github.io/coabundance
- Size: 212 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# coabundance
[](https://github.com/danlooo/coabundance/actions)
Wrapper arround several methods to asses co-abundant taxa in microbial datasets.
## Installation
You can install the released version of coabundance from [CRAN](https://CRAN.R-project.org) with:
``` r
devtools::install_github("danlooo/coabundance")
```
## Get Started
```r
library(coabundance)
data("abundances1", package = "coabundance")
coabundance1 <- correlate(abundances1)
```
## Websites
[https://danlooo.github.io/coabundance/](https://danlooo.github.io/coabundance/)
# coabundance