https://github.com/datajoint/datajoint-citations
Papers about DataJoint or using DataJoint
https://github.com/datajoint/datajoint-citations
Last synced: 4 months ago
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Papers about DataJoint or using DataJoint
- Host: GitHub
- URL: https://github.com/datajoint/datajoint-citations
- Owner: datajoint
- Created: 2020-03-17T14:25:29.000Z (over 5 years ago)
- Default Branch: master
- Last Pushed: 2022-02-06T22:42:15.000Z (over 3 years ago)
- Last Synced: 2025-01-10T16:23:32.476Z (6 months ago)
- Language: TeX
- Size: 574 KB
- Stars: 0
- Watchers: 10
- Forks: 4
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Citation: citations.tex
Awesome Lists containing this project
README
# datajoint-citations
This repository contains BibTeX collections of papers.
- `citations_all.bib` collects all papers, including those that briefly mention DataJoint, or foundational papers on relational database infrastructure.
- `citations_all.tex` categorizes these papers into...
- Neuroscience studies that use DataJoint
- Other studies that use DataJoint
- Publications describing DataJoint
- Data infrastructure papers involving DataJoint
- Other papers that make mention of DataJoint
- `citations_used.bib` collects papers that used DataJoint as part of their study (i.e., top two categories above)
- `citations_used.tex` is used to generate the corresponding markdown file for our website.
- `apa.csl` contains specifications for APA citation formatting
New papers that use DataJoint should be added to both `.bib` files.
Future work on this repository should investigate tools to generate `citations_used.bib` based on mention in corresponding sections of `citations_all.tex`.
# Usage
To download dependencies for OSX:
```bash
brew install basictex pandoc
tlmgr install fourier enumitem apacite
```
To generate a pdf from a `.tex` file, and remove auxiliary files:
```bash
pdflatex citations_.tex
bibtex citations_
pdflatex citations_.tex
pdflatex citations_.tex
rm *.aux *.blg *.out *.bbl *.log
```
To generate a markdown file:
```bash
pandoc -s --bibliography citations_used.bib --citeproc --csl=apa.csl \
citations_used.tex -t gfm -o citations_used.md \
--metadata title="Publications that use DataJoint"
```
This markdown file then requires minor edits to turn the default table at the top into a header:
```
---
bibliography: citations_used.bib
csl: apa.csl
title: Publications using DataJoint
---
```
becomes: `#Publications using DataJoint`