https://github.com/dfsp-spirit/reproducible_science
Introduction: towards reproducible science using version control and GNU R
https://github.com/dfsp-spirit/reproducible_science
git publications r science
Last synced: 6 months ago
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Introduction: towards reproducible science using version control and GNU R
- Host: GitHub
- URL: https://github.com/dfsp-spirit/reproducible_science
- Owner: dfsp-spirit
- License: mit
- Created: 2019-06-06T10:09:14.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2021-08-24T20:16:58.000Z (about 4 years ago)
- Last Synced: 2025-02-12T08:55:14.264Z (8 months ago)
- Topics: git, publications, r, science
- Language: HTML
- Size: 4.97 MB
- Stars: 3
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# Introduction: towards reproducible science using version control and GNU R
A very short introduction.
https://tinyurl.com/repsci
## Reproducible science
**Reproducibility** is "the ability to recompute data analytic results given an observed dataset and knowledge of the data analysis pipeline" ([Leek & Peng 2015](https://www.pnas.org/content/112/6/1645.short))
## How can we get there?
Quoting (Leek & Peng 2015):
* "the raw data from the experiment are available"
* "the statistical code and documentation to reproduce the analysis are available"
* "correct data analysis must be performed"
Today, we will focus on the second point and explore tools which can help others to understand and reproduce your data analysis.
Note that *others* may include yourself, 2 months later. ;)
## Tools we will get to know:
Click the links for the course materials.
* The version control system [Git](./git_intro/git_intro.md)
* Two R packages that help with reproducible research:
* [apaTables](http://htmlpreview.github.io/?https://github.com/dfsp-spirit/reproducible_science/blob/master/apaTables_intro/r_apaTables_intro.html)
* [rmarkdown](http://htmlpreview.github.io/?https://github.com/dfsp-spirit/reproducible_science/blob/master/rmarkdown_intro_en/rmarkdown_intro.html) (or the [german version](http://htmlpreview.github.io/?https://github.com/dfsp-spirit/reproducible_science/blob/master/rmarkdown_intro/rmarkdown_intro.html))
## Gettings a local copy of this repo
If you already have git installed, you can checkout this whole repository:
git clone https://github.com/dfsp-spirit/reproducible_science