https://github.com/dylanwal/well_plate

well plates
https://github.com/dylanwal/well_plate

Last synced: over 1 year ago
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well plates

• Host: GitHub
• URL: https://github.com/dylanwal/well_plate
• Owner: dylanwal
• License: bsd-3-clause
• Created: 2022-04-22T17:22:13.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2024-07-18T13:57:00.000Z (about 2 years ago)
• Last Synced: 2025-02-28T03:41:56.380Z (over 1 year ago)
• Language: Python
• Size: 58.6 KB
• Stars: 1
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.txt

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README

          
# Well Plate (well_plate)

---

---

![PyPI](https://img.shields.io/pypi/v/well_plate)

![downloads](https://static.pepy.tech/badge/well_plate)

![license](https://img.shields.io/github/license/dylanwal/well_plate)

Makes nice visualizations of well plates!

---

## Installation

```

pip install well_plate

```

## Dependencies

[numpy](https://github.com/numpy/numpy)

[pandas](https://github.com/pandas-dev/pandas)

[plotly](https://github.com/plotly/plotly.py)

---

---

## Options

* Well numbers

  * 6

  * 12

  * 24

  * 96

  * 384

  * To add more see [well_plate/config.py](https://github.com/dylanwal/well_plate/blob/master/well_plate/config.py)

* Well shape

  * 'circle'

  * 'rect' (square)

* Add data

  * use `wp.add_data()`; pass in a pd.Series with the index corresponding to well plate index (eg. "A1", "E4", ...)

---

---

## Example

### Basic example

```python

    import well_plate

    wp = well_plate.WellPlate(24)

    wp.plot()

```

![well_plate](https://raw.githubusercontent.com/dylanwal/well_plate/master/examples/well_plate_24.svg)

### Change well size

```python

    import well_plate

    wp = well_plate.WellPlate(96, "rect")

    wp.plot()

```

![well_plate](https://raw.githubusercontent.com/dylanwal/well_plate/master/examples/well_plate_96r.svg)

# Add data

```python

    import pandas as pd    

    import well_plate

    wp = well_plate.WellPlate(384, "rect")

    

    df = pd.read_csv("example1_data.csv", index_col=0)

    wp.add_data(df["mw_n"])

    

    wp.plot(key="mw_n")

    wp.heatmap(key="mw_n")

```

![well_plate](https://raw.githubusercontent.com/dylanwal/well_plate/master/examples/well_plate_with_data.svg)

![well_plate](https://raw.githubusercontent.com/dylanwal/well_plate/master/examples/heatmap.svg)