https://github.com/elianhugh/openscithesis

Cross-examining open science policies in journals, contrasting with perceived open science barriers in university
https://github.com/elianhugh/openscithesis

openaccess openscience sherpa

Last synced: about 22 hours ago
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Cross-examining open science policies in journals, contrasting with perceived open science barriers in university

• Host: GitHub
• URL: https://github.com/elianhugh/openscithesis
• Owner: ElianHugh
• Created: 2020-09-10T06:03:08.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2020-11-03T04:31:45.000Z (about 4 years ago)
• Last Synced: 2024-11-16T22:42:09.915Z (2 months ago)
• Topics: openaccess, openscience, sherpa
• Language: R
• Homepage:
• Size: 1.04 MB
• Stars: 1
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# OpenSciThesis

To run, source the [make.R file](make.R)

### Code for my Honours thesis on open science practice

This repository contains the R code for my honours thesis analysis. It uses the [drake package](https://github.com/ropensci/drake) and Miles McBain's [dflow](https://github.com/MilesMcBain/dflow) for structuring the file base.

Please see [here](R/plan.R) for the drake code plan. Each file in the R folder is [used as a function](https://books.ropensci.org/drake/scripts.html#function-oriented-workflows) in the plan.

### This code cannot be run on its own!

As I do not have ownership over the data used, the data/ folder is not part of this repository. If permission is given for the data to be uploaded, it will likely be uploaded to the [Open Science Framework](https://osf.io/cxus9/).

The data files that are missing are:

- TOP factor data

  - This can be obtained from: https://osf.io/qatkz/

- Sherpa/ROMEO data

  - This can be obtained from: https://v2.sherpa.ac.uk/romeo/

  - I use an API call  in fetch_sherpa to obtain the journals for analysis. An api key is needed for this to work (see get_key).

- Journal ranking data

  - This can be obtained from Scopus: https://www.scopus.com/sources

  - Have to export the first sheet of the xlsb as 'CiteScore.csv', as R cannot parse xlsb files well.

- Survey data

  - This cannot currently be obtained without permission. If uploaded, will be on the OSF.

### Dependency Graph

![dependency graph](plot.png)