https://github.com/ethanbass/shinychromviewer

Shiny gadget for interactively viewing 3D chromatograms
https://github.com/ethanbass/shinychromviewer

chromatography hplc hplc-dad hplc-uv open-data open-science r-package rstats shiny shiny-apps

Last synced: 13 days ago
JSON representation

Shiny gadget for interactively viewing 3D chromatograms

• Host: GitHub
• URL: https://github.com/ethanbass/shinychromviewer
• Owner: ethanbass
• License: gpl-3.0
• Created: 2022-05-29T16:38:30.000Z (over 2 years ago)
• Default Branch: master
• Last Pushed: 2022-11-13T20:55:00.000Z (about 2 years ago)
• Last Synced: 2024-01-27T06:10:03.846Z (11 months ago)
• Topics: chromatography, hplc, hplc-dad, hplc-uv, open-data, open-science, r-package, rstats, shiny, shiny-apps
• Language: R
• Homepage:
• Size: 412 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md

Awesome Lists containing this project

README

        
# ShinyChromViewer

  [![ShinyChromViewer status badge](https://ethanbass.r-universe.dev/badges/ShinyChromViewer)](https://ethanbass.r-universe.dev)

  [![stability-experimental](https://img.shields.io/badge/stability-experimental-orange.svg)](https://github.com/emersion/stability-badges#experimental)

## Overview

ShinyChromViewer is an Shiny gadget for interactive viewing and exploration of 3D chromatographic data (e.g. from HPLC-DAD). It is mainly meant to be used in conjunction with [chromatographR](https://ethanbass.github.io/chromatographR) as an add-on.

## Installation

ShinyChromViewer can be installed from GitHub as follows:

```

install.packages("devtools")

devtools::install_github("https://github.com/ethanbass/ShinyChromViewer/")

```

Or install directly from my R Universe repo:

```

install.packages("ShinyChromViewer", repos="https://ethanbass.r-universe.dev/", type="source")

```

## Usage

To run ShinyChromConverter you must provide a list of chromatograms in `matrix` format. In addition, you can provide a `peak_table` object produced by [chromatographR](https://ethanbass.github.io/chromatographR). The script below loads the example data from chromatographR and launches the `chrom_viewer`. 

```

library(chromatographR)

library(ShinyChromViewer)

data(Sa_warp)

data(pk_tab)

chrom_viewer(pk_tab)

```

To view spectra, click on the trace plot (*lower left panel*) or the peak table (*right panel*).