https://github.com/ethanbass/zerenebatchr

Utility for batch processing images in Zerene Stacker
https://github.com/ethanbass/zerenebatchr

focus-stacking r-package

Last synced: 4 days ago
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Utility for batch processing images in Zerene Stacker

• Host: GitHub
• URL: https://github.com/ethanbass/zerenebatchr
• Owner: ethanbass
• License: mit
• Created: 2022-10-05T18:30:20.000Z (about 2 years ago)
• Default Branch: master
• Last Pushed: 2024-07-18T19:57:04.000Z (5 months ago)
• Last Synced: 2024-07-19T03:47:42.085Z (5 months ago)
• Topics: focus-stacking, r-package
• Language: R
• Homepage:
• Size: 51.8 KB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md
  • License: LICENSE

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README

        
# zerenebatchR

  [![zerenebatchR status badge](https://ethanbass.r-universe.dev/badges/zerenebatchR)](https://ethanbass.r-universe.dev)

  [![stability-experimental](https://img.shields.io/badge/stability-experimental-orange.svg)](https://github.com/emersion/stability-badges#experimental)

## Overview

`zerenebatchR` is an R utility for batch processing images in [Zerene Stacker](http://www.zerenesystems.com/cms/stacker). [Batch processing in Zerene Stacker](https://zerenesystems.com/cms/stacker/docs/howtouseit#batch_processing) requires you to already have the images you want to process organized into folders by stack. If you have many stacks, this can be an onerous task. `zerenebatchR` aims to simplify this process by automatically grouping images into folders using information supplied from a spreadsheet and creating the required batch file. **`zerenebatchR` is not created or endorsed by the developers of Zerene Stacker.**

## Installation

zerenebatchR can be installed from GitHub as follows:

```

install.packages("remote")

remotes::install_github("https://github.com/ethanbass/zerenebatchR/")

```

Or install directly from my R Universe repo:

```

install.packages("zerenebatchR", repos="https://ethanbass.r-universe.dev/", type="source")

```

## Usage

The function `expand_zs_batch` can be used to expand a `data.frame` containing the first and last file in a stack. This expanded `data.frame` can then be fed to the `run_zs_batch` function to stack images in Zerene Stacker. `zerenebatchR` automatically creates the folders of images that are required for batch image processing in Zerene Stacker and creates the batch script. For further details, please see the documentation by running `?zerenebatchR::run_zs_batch` or `?zerenebatchR::expand_zs_batch` from your R console.