https://github.com/fairdataihub/fair-amd-oct-paper-dataset
Dataset associated with the paper on FAIR assessment of AMD-related datasets containing OCT data
https://github.com/fairdataihub/fair-amd-oct-paper-dataset
Last synced: 4 months ago
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Dataset associated with the paper on FAIR assessment of AMD-related datasets containing OCT data
- Host: GitHub
- URL: https://github.com/fairdataihub/fair-amd-oct-paper-dataset
- Owner: fairdataihub
- License: cc-by-4.0
- Created: 2024-07-06T01:04:58.000Z (almost 2 years ago)
- Default Branch: main
- Last Pushed: 2025-02-25T18:57:22.000Z (over 1 year ago)
- Last Synced: 2025-04-03T04:27:04.327Z (over 1 year ago)
- Homepage:
- Size: 562 KB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE.txt
Awesome Lists containing this project
README
[![Contributors][contributors-shield]][contributors-url]
[![Stargazers][stars-shield]][stars-url]
[![Issues][issues-shield]][issues-url]
[![CC BY 4.0][cc-by-shield]][cc-by]
[](https://doi.org/10.5281/zenodo.12669651)
[contributors-shield]: https://img.shields.io/github/contributors/fairdataihub/FAIR-AMD-OCT-paper-dataset.svg?style=flat-square
[contributors-url]: https://github.com/fairdataihub/FAIR-AMD-OCT-paper-dataset/graphs/contributors
[stars-shield]: https://img.shields.io/github/stars/fairdataihub/FAIR-AMD-OCT-paper-dataset.svg?style=flat-square
[stars-url]: https://github.com/fairdataihub/FAIR-AMD-OCT-paper-dataset/stargazers
[issues-shield]: https://img.shields.io/github/issues/fairdataihub/FAIR-AMD-OCT-paper-dataset.svg?style=flat-square
[issues-url]: https://github.com/fairdataihub/FAIR-AMD-OCT-paper-dataset/issues
[cc-by]: http://creativecommons.org/licenses/by/4.0/
[cc-by-image]: https://i.creativecommons.org/l/by/4.0/88x31.png
[cc-by-shield]: https://img.shields.io/badge/License-CC%20BY%204.0-lightgrey.svg
# Dataset: FAIR AMD OCT Datasets Paper
## About
This is the dataset associated with the paper titled "Publicly Available Imaging Datasets for Age-related Macular Degeneration: Evaluation according to the Findable, Accessible, Interoperable, Reproducible (FAIR) Principles". Age-related macular degeneration (AMD), a leading cause of vision loss among older adults, affects more than 200 million people worldwide. In this paper, We evaluated openly available AMD-related datasets containing optical coherence tomography (OCT) data against the FAIR principles. This repository contains the data related to our evaluation. See this [inventory](https://github.com/fairdataihub/FAIR-AMD-OCT-paper-inventory) for all related resources, including the paper.
## Standards followed
This dataset is structured according to the SPARC Data Structure v2.1 (c.f. [related manuscript](https://doi.org/10.1101/2021.02.10.430563) and [documentation](https://docs.sparc.science/docs/navigating-a-sparc-dataset#sparc-dataset-structure)) and curated using the SPARC data curation software [SODA v15.3.0](https://github.com/fairdataihub/SODA-for-SPARC).
## Using the dataset
Simply download this repository to use the data files. Alternatively, you can download it from [Zenodo](https://doi.org/10.5281/zenodo.12669651). The main data files are in the `primary` folder. There is a `manifest.xlsx` file in that folder that describe both files. The `derivative` folder contain supplementary figures associated with the paper, which are also described in the `manisfest.xlsx` file. See this [inventory](https://github.com/fairdataihub/FAIR-AMD-OCT-paper-inventory) for a link to the Jupyter notebook we developed to analyze and visualize the data.
## License
This work is licensed under a
[Creative Commons Attribution 4.0 International License][cc-by].
[![CC BY 4.0][cc-by-image]][cc-by]
## Feedback and contribution
Use the [GitHub issues](https://github.com/fairdataihub/FAIR-AMD-OCT-paper-dataset) for submitting feedback or making suggestions. You can also fork the repository and submit a pull request with suggestions.
## How to cite
If you use this dataset, please cite the related paper (it will be listed [here](https://github.com/fairdataihub/FAIR-AMD-OCT-paper-inventory) when available) and also cite this repository as (see on Zenodo for citing a specific version of this dataset):
```bash
Gim, Nayoon, Ferguson, Alina, Blazes, Marian, Soundarajan, Sanjay, Gasimova, Aydan, Patel, Bhavesh & Lee, Cecilia. (2024). Dataset: FAIR AMD OCT Datasets Paper [Data set]. Zenodo. 10.5281/zenodo.12669651
```