https://github.com/fgcz/rawDiag

Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package
https://github.com/fgcz/rawDiag

fast mass-spectrometry multiplatform orbitrap r rpackage visualization

Last synced: about 1 month ago
JSON representation

Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package

• Host: GitHub
• URL: https://github.com/fgcz/rawDiag
• Owner: fgcz
• Created: 2018-03-13T12:16:47.000Z (almost 7 years ago)
• Default Branch: devel
• Last Pushed: 2024-05-01T09:10:36.000Z (8 months ago)
• Last Synced: 2024-11-07T19:56:44.241Z (about 1 month ago)
• Topics: fast, mass-spectrometry, multiplatform, orbitrap, r, rpackage, visualization
• Language: R
• Homepage: https://bioconductor.org/packages/rawDiag
• Size: 172 MB
• Stars: 36
• Watchers: 7
• Forks: 11
• Open Issues: 39
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md

Awesome Lists containing this project

• awesome-proteomics - rawDiag - R - Package that can be used in conjustion with rawrr - [paper](https://pubs.acs.org/doi/10.1021/acs.jproteome.8b00173) (5. Raw Data Analysis / Table of Contents)

README

        
[![JPR](https://img.shields.io/badge/JPR-10.1021%2Facs.jproteome.8b00173-brightgreen)](http://dx.doi.org/10.1021/acs.jproteome.8b00173)

# rawDiag 

![octopussy](vignettes/octopussy.png)

an R package supporting rational LC-MS method optimization for bottom-up proteomics on multiple OS platforms

main features:

 

1. **multiplatform** and **fast** reading through using [The New RawFileReader from Thermo Fisher Scientific](http://planetorbitrap.com/rawfilereader).

2. uses latest visualization generation through using Rs [ggplot2](https://cran.r-project.org/package=ggplot2) package.

3. provides an R interface to your instrument raw data.

4. ships with an example [shiny application](http://fgcz-ms-shiny.uzh.ch:8080/bfabric_rawDiag/).