https://github.com/fjossinet/dockerna

Docker images providing fully configured RNA algorithms
https://github.com/fjossinet/dockerna

Last synced: 14 days ago
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Docker images providing fully configured RNA algorithms

• Host: GitHub
• URL: https://github.com/fjossinet/dockerna
• Owner: fjossinet
• Created: 2016-04-29T10:29:47.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2016-04-29T10:43:54.000Z (over 8 years ago)
• Last Synced: 2024-11-06T12:19:37.118Z (2 months ago)
• Homepage:
• Size: 1000 Bytes
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# DockeRNA

This page details some of my Docker images. These images provides fully configured RNA algorithms to be used with [the RNA Science Toolbox](http://fjossinet.github.io/RNA-Science-Toolbox/).

## [fjossinet/assemble2](https://hub.docker.com/r/fjossinet/assemble2/)

This image provides the following algorithms:

* [RNAVIEW](http://ndbserver.rutgers.edu/ndbmodule/services/download/rnaview.html)

* [Vienna RNA package](https://www.tbi.univie.ac.at/RNA/)

* [foldalign](http://rth.dk/resources/foldalign/)

* [LocARNA](http://rna.informatik.uni-freiburg.de/LocARNA/)

This image has also been designed to provide the Web services needed by the RNA 3D modeling tool [Assemble2](http://www.bioinformatics.org/assemble/).

## [fjossinet/rnaseq](https://hub.docker.com/r/fjossinet/rnaseq/)

This image provides the following algorithms:

* [SAMtools](http://samtools.sourceforge.net)

* [Tophat2](https://ccb.jhu.edu/software/tophat/)

* [Bowtie2](http://bowtie-bio.sourceforge.net/bowtie2/index.shtml)