https://github.com/fpaskali/madapp

https://github.com/fpaskali/madapp

Last synced: about 1 year ago
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• Host: GitHub
• URL: https://github.com/fpaskali/madapp
• Owner: fpaskali
• License: gpl-3.0
• Created: 2025-06-12T15:55:37.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2025-06-13T14:47:48.000Z (about 1 year ago)
• Last Synced: 2025-06-13T15:47:33.489Z (about 1 year ago)
• Language: R
• Size: 2.08 MB
• Stars: 0
• Watchers: 0
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md
  • Code of conduct: CODE_OF_CONDUCT.md

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README

          

##  Microarray Data Analysis Application (MADApp)

The repository of the development version of shiny application MADApp

[![License: LGPL v3](https://img.shields.io/badge/License-LGPL%20v3-blue.svg)](https://www.gnu.org/licenses/lgpl-3.0)

[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)

![Linux](https://img.shields.io/badge/Linux-FCC624?style=flat&logo=linux&logoColor=black)

[![Windows](https://badgen.net/badge/icon/windows?icon=windows&label)](https://microsoft.com/windows/)

## Description

Microarray Data Analysis Application is an application for a quantification of microarray images.

## Installation

To install the required packages, load the project from RStudio and run the following command in the R console:

```{r}

renv::restore()

```

Alternatively, you can open terminal in the MADApp root directory, start R and use the same command in R console.

## System dependencies

Certain R packages require system libraries to be preinstalled. Below are the commands to install these libraries for different Linux distributions:

### Debian/Ubuntu

Use the following command to install the necessary dependencies:

```{bash}

sudo apt install libtiff-dev libfftw3-dev libcurl4-openssl-dev libssl-dev libxml2-dev

```

### Fedora/RHEL

Use this command to install the dependencies:

```{bash}

sudo dnf install libtiff-devel fftw-devel libcurl-devel openssl-devel libxml2-devel

```

* If you encounter errors in the installation process or additional dependencies are needed, please open an issue to report them.

## Start App

To start the application from RStudio, load the project and run the following command in the R console:

```{r}

shiny::runApp()

```

## Preview

![tab1](preview/preview_1.png)

![tab2](preview/preview_2.png)

![tab3](preview/preview_3.png)

![tab4](preview/preview_4.png)

![tab5](preview/preview_5.png)