https://github.com/frbcesab/agrite
:basket: Retrieve DOI from a full citation
https://github.com/frbcesab/agrite
bibtex crossref doi r web-of-science
Last synced: 6 months ago
JSON representation
:basket: Retrieve DOI from a full citation
- Host: GitHub
- URL: https://github.com/frbcesab/agrite
- Owner: FRBCesab
- License: gpl-2.0
- Created: 2022-10-13T12:50:15.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2023-03-02T08:52:52.000Z (over 2 years ago)
- Last Synced: 2025-01-29T18:14:40.001Z (8 months ago)
- Topics: bibtex, crossref, doi, r, web-of-science
- Language: R
- Homepage: https://frbcesab.github.io/agrite
- Size: 10.6 MB
- Stars: 3
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.Rmd
- License: LICENSE.md
Awesome Lists containing this project
README
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(collapse = TRUE,
comment = "#>",
fig.path = "man/figures/",
out.width = "100%")
```
# Agri-TE
[](https://github.com/frbcesab/agrite/actions/workflows/R-CMD-check.yaml)
[](https://choosealicense.com/licenses/gpl-2.0/)
[](https://github.com/frbcesab/agrite/actions/workflows/pkgdown.yaml)
[](#)
Research Compendium of the
[FRB-CESAB](https://www.fondationbiodiversite.fr/en/about-the-foundation/le-cesab/)
research group
[Agri-TE](https://www.fondationbiodiversite.fr/en/the-frb-in-action/programs-and-projects/le-cesab/agri-te/).
This repository contains different functions to retrieve the DOI, metadata and full text of a raw reference
citation using the [Web of Science Lite API](https://developer.clarivate.com/apis/woslite)
(and the R package [`rwoslite`](https://github.com/frbcesab/rwoslite)) and the
[CrossRef API](https://www.crossref.org/documentation/retrieve-metadata/rest-api/)
(and the R package [`rcrossref`](https://cran.r-project.org/package=rcrossref)).
### Content
This repository is structured as follow:
- [`data/`](https://github.com/frbcesab/agrite/tree/master/data):
contains all raw data required to perform analyses
- [`analyses/`](https://github.com/frbcesab/agrite/tree/master/analyses/):
contains R scripts to run each step of the workflow
- [`outputs/`](https://github.com/frbcesab/agrite/tree/master/outputs):
contains all the results created during the workflow
- [`R/`](https://github.com/frbcesab/agrite/tree/master/R):
contains R functions developed especially for this project
- [`man/`](https://github.com/frbcesab/agrite/tree/master/man):
contains help files of R functions
- [`DESCRIPTION`](https://github.com/frbcesab/agrite/tree/master/DESCRIPTION):
contains project metadata (author, date, dependencies, etc.)
- [`make.R`](https://github.com/frbcesab/agrite/tree/master/make.R):
main R script to run the entire project by calling each R script stored in the `analyses/` folder
### Usage
Clone the repository, open RStudio, create a new project inside this folder
and open the `make.R`.
### How to cite
Please cite this compendium as:
> Casajus N. & Bellouin D. (2023) agrite: A Toolbox to Retrieve DOI, Metadata, and Full Text from a Raw Citation.
### Notes
- All required packages, listed in the `DESCRIPTION` file, will be installed (if necessary)
- All required packages and R functions will be loaded
- Some analyses listed in the `make.R` might take time