https://github.com/gagniuc/global-sequence-alignment-in-js

This implementation makes a global alignment between two strings and it demonstrates the use of the global alignment algorithm.
https://github.com/gagniuc/global-sequence-alignment-in-js

alignment bioinformatics dna global proteins rna sequence

Last synced: about 1 month ago
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This implementation makes a global alignment between two strings and it demonstrates the use of the global alignment algorithm.

• Host: GitHub
• URL: https://github.com/gagniuc/global-sequence-alignment-in-js
• Owner: Gagniuc
• License: mit
• Created: 2022-01-25T19:50:22.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2022-11-23T00:26:31.000Z (almost 3 years ago)
• Last Synced: 2025-03-04T22:25:29.788Z (7 months ago)
• Topics: alignment, bioinformatics, dna, global, proteins, rna, sequence
• Language: HTML
• Homepage:
• Size: 39.1 KB
• Stars: 4
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Funding: .github/FUNDING.yml
  • License: LICENSE.md

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README

          
# Global sequence alignment in JS

This JavaScript/HTML5 implementation makes a global sequence alignment between two strings, namely between a sequence s0='TGAATTCAGTTA' and s1='TGGATCGA'. In fact, this simple implementation makes an alignment between any two strings. All symbols from UTF-8 are accepted by this algorithm. For an implementation of local sequence alignment please see [this repository](https://github.com/Gagniuc/Local-sequence-alignment-in-JS).

# Live demo 

https://gagniuc.github.io/Global-sequence-alignment-in-JS/

# Screenshot

![screenshot](https://github.com/Gagniuc/Global-sequence-alignment-in-JS/blob/main/img/global%20sequence%20alignment.png?raw=true)

# References

- Paul A. Gagniuc. Algorithms in Bioinformatics: Theory and Implementation. John Wiley & Sons, Hoboken, NJ, USA, 2021, ISBN: 9781119697961.