https://github.com/genenotebook/genenotebook

A collaborative notebook for genes and genomes
https://github.com/genenotebook/genenotebook

d3js data-warehouse expression-browser genome-analysis genome-annotation genome-browser meteorjs mongodb nodejs reactjs

Last synced: 8 months ago
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A collaborative notebook for genes and genomes

• Host: GitHub
• URL: https://github.com/genenotebook/genenotebook
• Owner: genenotebook
• License: agpl-3.0
• Created: 2016-02-03T12:32:49.000Z (almost 10 years ago)
• Default Branch: master
• Last Pushed: 2025-03-24T11:30:50.000Z (8 months ago)
• Last Synced: 2025-03-24T12:36:38.362Z (8 months ago)
• Topics: d3js, data-warehouse, expression-browser, genome-analysis, genome-annotation, genome-browser, meteorjs, mongodb, nodejs, reactjs
• Language: JavaScript
• Homepage: http://genenotebook.github.io/
• Size: 180 MB
• Stars: 11
• Watchers: 4
• Forks: 11
• Open Issues: 28
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE

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README

          
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# GeneNoteBook

### A collaborative notebook for comparative genomics

> Full documentation is at http://genenotebook.github.io/

### Install using Conda

```

conda install -c bioconda genenotebook

```

### Start GeneNoteBook

```

genenotebook run

```

Navigate to http://localhost:3000

> :warning: The default admin account is `username: admin` `password: admin`, please change this immediately! :warning:

Add data (for example from testdata.tgz found in this repository)

```

genenotebook add genome -u admin -p admin --port 3000 -n test testdata.fasta

genenotebook add annotation -u admin -p admin --port 3000 -n test testdata.gff3

```