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https://github.com/genenotebook/genenotebook

A collaborative notebook for genes and genomes
https://github.com/genenotebook/genenotebook

d3js data-warehouse expression-browser genome-analysis genome-annotation genome-browser meteorjs mongodb nodejs reactjs

Last synced: 4 months ago
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A collaborative notebook for genes and genomes

Host: GitHub
URL: https://github.com/genenotebook/genenotebook
Owner: genenotebook
License: agpl-3.0
Created: 2016-02-03T12:32:49.000Z (about 9 years ago)
Default Branch: master
Last Pushed: 2024-09-27T18:39:02.000Z (5 months ago)
Last Synced: 2024-10-01T05:08:23.389Z (5 months ago)
Topics: d3js, data-warehouse, expression-browser, genome-analysis, genome-annotation, genome-browser, meteorjs, mongodb, nodejs, reactjs
Language: JavaScript
Homepage: http://genenotebook.github.io/
Size: 180 MB
Stars: 11
Watchers: 5
Forks: 11
Open Issues: 28
Metadata Files:
- Readme: README.md
- Changelog: CHANGELOG.md
- License: LICENSE

Awesome Lists containing this project

README

        [![Anaconda-Server Badge](https://anaconda.org/bioconda/genenotebook/badges/version.svg)](https://anaconda.org/bioconda/genenotebook)[![Anaconda-Server Badge](https://anaconda.org/bioconda/genenotebook/badges/latest_release_date.svg)](https://anaconda.org/bioconda/genenotebook)[![Anaconda-Server Badge](https://anaconda.org/bioconda/genenotebook/badges/platforms.svg)](https://anaconda.org/bioconda/genenotebook)

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# GeneNoteBook

### A collaborative notebook for comparative genomics

> Full documentation is at http://genenotebook.github.io/

### Install using Conda

```

conda install -c bioconda genenotebook

```

### Start GeneNoteBook

```

genenotebook run

```

Navigate to http://localhost:3000

> :warning: The default admin account is `username: admin` `password: admin`, please change this immediately! :warning:

Add data (for example from testdata.tgz found in this repository)

```

genenotebook add genome -u admin -p admin --port 3000 -n test testdata.fasta

genenotebook add annotation -u admin -p admin --port 3000 -n test testdata.gff3

```