https://github.com/genepattern/stream.preprocess
Step one of the STREAM ssRNA-Seq Trajectory pipeline
https://github.com/genepattern/stream.preprocess
genepattern-module rna-seq single-cell
Last synced: 4 months ago
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Step one of the STREAM ssRNA-Seq Trajectory pipeline
- Host: GitHub
- URL: https://github.com/genepattern/stream.preprocess
- Owner: genepattern
- License: bsd-3-clause
- Created: 2019-08-28T16:59:06.000Z (almost 7 years ago)
- Default Branch: develop
- Last Pushed: 2020-02-04T17:51:13.000Z (over 6 years ago)
- Last Synced: 2024-12-31T03:13:35.199Z (over 1 year ago)
- Topics: genepattern-module, rna-seq, single-cell
- Language: Python
- Size: 29.9 MB
- Stars: 0
- Watchers: 7
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# STREAM.Preprocess
Preprocess single cell RNA-seq data to prepare it for the STREAM trajectory analysis. This module will normalize, log transform, filter and remove mitochondiral genes.
[Full Documentation](https://beta.genepattern.org/gp/getTaskDoc.jsp?name=urn:lsid:broad.mit.edu:cancer.software.genepattern.module.analysis:00395:0.2)