https://github.com/genometric/gemse

GenoMetric Space Explorer
https://github.com/genometric/gemse

clustering genome-analysis pattern-recognition visualization

Last synced: 9 months ago
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GenoMetric Space Explorer

• Host: GitHub
• URL: https://github.com/genometric/gemse
• Owner: Genometric
• License: gpl-3.0
• Created: 2017-05-27T08:07:22.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2017-12-24T19:24:24.000Z (about 8 years ago)
• Last Synced: 2025-04-12T20:54:07.080Z (9 months ago)
• Topics: clustering, genome-analysis, pattern-recognition, visualization
• Language: Java
• Homepage: http://www.bioinformatics.deib.polimi.it/genomic_computing/GeMSE/
• Size: 28.2 MB
• Stars: 2
• Watchers: 1
• Forks: 2
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md

Awesome Lists containing this project

README

          
# GeMSE

**Transparent, reproducible, and interactive exploratory data analysis tool for genomics interval-based data.**

| [Introduction](https://youtu.be/75FCAoSmioA) | [Documentation](https://github.com/Genometric/GeMSE/wiki) | [Demos](https://youtu.be/B0hVsd9SE5Q?list=PLfWxoOMC6swJBgu4nIDgsoXO_sLuGnIqF) | [Download](https://github.com/Genometric/GeMSE/releases/) | [Homepage](http://www.bioinformatics.deib.polimi.it/GeMSE/) | [Publication](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1945-9)

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### Publication

Jalili, V., Matteucci, M., Masseroli, M., & Ceri, S. (2017). 


[Explorative visual analytics on interval-based genomic data and their metadata.](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1945-9)


BMC bioinformatics, 18(1), 536.

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### Tree-based tracking history of operations

![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/history.gif "Track analysis history")

### Interactive pattern analysis

![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/patternAnalysis.gif "Pattern analysis")

![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/patternDetails.gif "Pattern in details")

### Responsive statistical inference

![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/stateAnalysis.gif "statistical inference")

![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/boxplot.gif "Box plot")

### Graph view

![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/directed.gif "Force directed graph view")

![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/radial.gif "Radial graph view")

![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/directedAgg.gif "Directed aggregated graph view")