https://github.com/germinateplatform/germinate-vue

Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.
https://github.com/germinateplatform/germinate-vue

chemical-compounds climate-data database genetics genotypes germinate mysql pedigree phenotypes plant-genetic-resources vuejs website

Last synced: 4 months ago
JSON representation

Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.

• Host: GitHub
• URL: https://github.com/germinateplatform/germinate-vue
• Owner: germinateplatform
• License: apache-2.0
• Created: 2019-08-08T19:44:24.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2025-11-11T16:26:21.000Z (7 months ago)
• Last Synced: 2026-02-01T23:35:14.766Z (4 months ago)
• Topics: chemical-compounds, climate-data, database, genetics, genotypes, germinate, mysql, pedigree, phenotypes, plant-genetic-resources, vuejs, website
• Language: Vue
• Homepage: https://ics.hutton.ac.uk/get-germinate
• Size: 13.5 MB
• Stars: 18
• Watchers: 2
• Forks: 6
• Open Issues: 4
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md
  • Citation: CITATION.cff

Awesome Lists containing this project

• open-sustainable-technology - Germinate - An open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized. (Biosphere / Plants and Vegetation)

README

          
# Germinate - The generic plant genetic resources database



  



![GitHub](https://img.shields.io/github/license/germinateplatform/germinate-vue?style=for-the-badge&logo=apache)

![GitHub release (latest by date)](https://img.shields.io/github/v/release/germinateplatform/germinate-vue?style=for-the-badge)

![GitHub last commit](https://img.shields.io/github/last-commit/germinateplatform/germinate-vue?style=for-the-badge&logo=git)

[![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-2.1-4baaaa.svg?style=for-the-badge)](CODE_OF_CONDUCT.md)

![Docker Pulls](https://img.shields.io/docker/pulls/cropgeeks/germinate?style=for-the-badge&logo=docker)

[![Docker CI Push](https://img.shields.io/github/actions/workflow/status/germinateplatform/germinate-vue/docker-ci-push.yml?label=GitHub%20Push%20Action&logo=github&style=for-the-badge)](https://github.com/germinateplatform/germinate-vue/actions/workflows/docker-ci-push.yml)

[![Docker CI Tag](https://img.shields.io/github/actions/workflow/status/germinateplatform/germinate-vue/docker-ci-push.yml?label=GitHub%20Tag%20Action&logo=github&style=for-the-badge)](https://github.com/germinateplatform/germinate-vue/actions/workflows/docker-ci-tag.yml)

[![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.14858537-007ec6?style=for-the-badge)](https://doi.org/10.5281/zenodo.14858537)

![](https://germinateplatform.github.io/get-germinate/images/screenshot-1.png "Home page")

Germinate is an open source plant database infrastructure and application programming platform

on which complex data from genetic resource collections can be stored, queried and visualized

using common, reusable, programming components. Germinate utilises modern web and database

standards to provide a common architecture and high performance web-based user interface and

analytics functionality across a wide variety of data types including: passport, phenotypic,

field trial, pedigree, genetic, climatic, geographic location data as well as user-submitted

annotations. In addition, it provides links to an expanding variety of external visualization

and analysis tools such as [Helium](https://ics.hutton.ac.uk/helium) for pedigree visualization,

[Flapjack](https://ics.hutton.ac.uk/flapjack) for graphical genotyping and

[CurlyWhirly](https://ics.hutton.ac.uk/curlywhirly) for 3D coordinate data.

The single point of access for all background data on genetic resources collections that

Germinate implements, provides a valuable digital curation resource as well as offering

essential continuity on how new data is recorded and presented to researchers and breeders

which brings focus and facilitates community building into research communities.

## Website

Want to know more? Browse our homepage ([https://ics.hutton.ac.uk/get-germinate](https://ics.hutton.ac.uk/get-germinate))

## Interactive Demo Instance

If you want to explore Germinate and try out all the features, have a play about with our [demo database](https://ics.hutton.ac.uk/germinate-demo).

## Download

Please consult the [online documentation](https://germinateplatform.github.io/germinate-server) for a variety of options to download and run Germinate yourself.

## Contact

If you have any questions or suggestions, please send us an email on [germinate@hutton.ac.uk](mailto:germinate@hutton.ac.uk) or post an issue.

## Acknowledgements

The Germinate Team gratefully acknowledges support by the following organizations who have generously provided us with open source licenses for their software products:

### Lokalise



We use [Lokalise](https://lokalise.co/) to manage Germinate's translations.

### Funders

We are very grateful for the funding Germinate has received over the years. Below is a list of our main funders who we have worked with closely during the development of Germinate.