https://github.com/getwilds/rcromwell
R client for interacting with Cromwell with WDL workflows
https://github.com/getwilds/rcromwell
r r-package rstats wilds-r workflow workflow-engine workflow-management
Last synced: about 1 year ago
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R client for interacting with Cromwell with WDL workflows
- Host: GitHub
- URL: https://github.com/getwilds/rcromwell
- Owner: getwilds
- License: other
- Created: 2020-01-13T19:37:06.000Z (over 6 years ago)
- Default Branch: main
- Last Pushed: 2024-09-17T04:53:04.000Z (over 1 year ago)
- Last Synced: 2024-09-17T07:38:26.815Z (over 1 year ago)
- Topics: r, r-package, rstats, wilds-r, workflow, workflow-engine, workflow-management
- Language: R
- Homepage: http://getwilds.org/rcromwell/
- Size: 4.9 MB
- Stars: 4
- Watchers: 4
- Forks: 2
- Open Issues: 9
-
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- License: LICENSE
- Code of conduct: .github/CODE_OF_CONDUCT.md
Awesome Lists containing this project
README
```{r include=FALSE}
knitr::opts_chunk$set(
comment = "#>",
collapse = TRUE,
warning = FALSE,
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# rcromwell
[](https://getwilds.github.io/badges/#experimental)
[](https://github.com/getwilds/rcromwell/actions/workflows/R-CMD-check.yaml)
[](https://codecov.io/gh/getwilds/rcromwell)
Convenience Tools for Managing WDL Workflows via Cromwell
Cromwell is a scientific workflow engine designed for simplicity and scalability. It's maintained by the [Broad Institute](https://www.broadinstitute.org/). ([docs](https://cromwell.readthedocs.io/en/latest/), [code source](https://github.com/broadinstitute/cromwell)).
`rcromwell` is maintained by the [Fred Hutch Cancer Center Data Science Lab](https://hutchdatascience.org/).
## Installation
You can install the development version of `rcromwell` from [GitHub](https://github.com/) with:
```r
# install.packages("pak")
pak::pak("getwilds/rcromwell")
```
## Documentation
Go to for `rcromwell` package documentation. Go to the [Get Started vignette](https://getwilds.org/rcromwell/articles/rcromwell.html) to get started, or [reference page](https://getwilds.org/rcromwell/reference/index.html) for the function documentation.
## Bugs? Features?
Open an issue on our [issue tracker](https://github.com/getwilds/rcromwell/issues/).
## Code of Conduct
Please note that the rcromwell project is released with a [Contributor Code of Conduct](http://getwilds.org/rcromwell/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.
## License
[MIT](LICENSE.md)
## Prior art
- [wdlRunR](https://github.com/seandavi/wdlRunR) - archived package/repo