https://github.com/guifernandess7/biostream-genomic-data-analytics
Genetic Streaming Application: Rust CLI leveraging Websockets and Biopython for near real-time genetic data visualization.
https://github.com/guifernandess7/biostream-genomic-data-analytics
biopython cli python rabbitmq rust streamlit
Last synced: 11 months ago
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Genetic Streaming Application: Rust CLI leveraging Websockets and Biopython for near real-time genetic data visualization.
- Host: GitHub
- URL: https://github.com/guifernandess7/biostream-genomic-data-analytics
- Owner: GuiFernandess7
- Created: 2024-06-20T21:07:43.000Z (over 1 year ago)
- Default Branch: main
- Last Pushed: 2024-07-03T18:38:21.000Z (over 1 year ago)
- Last Synced: 2025-01-21T15:14:01.217Z (about 1 year ago)
- Topics: biopython, cli, python, rabbitmq, rust, streamlit
- Language: Python
- Homepage:
- Size: 50.8 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
## 📊 🧬 Real-time genetic data streaming
Data processing, streaming and analytics (ETL) software for genetic data, including nucleotide genome sequences
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### Source:
NCBI Datasets Data Packages can include sequence, annotation and other data files, and metadata in one or more data report files.
Data report files are in JSON Lines format.
https://www.ncbi.nlm.nih.gov/datasets
---
### Data used:
Organism Scientific Name: Dalotia coriaria
https://www.ncbi.nlm.nih.gov/datasets/genome/?taxon=866043
---
### Preview
* **Nucleotide Distribution | Near Real Time**
https://github.com/GuiFernandess7/biostream-genomic-data-analytics/assets/63022500/cda27c2f-0dcd-4042-8aac-41acfcd29d6d
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### Tools, Technologies and Modules
* Rust | Cli
* Websockets
* Tornado
* RabbitMQ
* Streamlit
* Plotly
---
### Architeture:
