https://github.com/ibchgenomic/evai-analyzer

eVaianalyzer for human genomics
https://github.com/ibchgenomic/evai-analyzer

cancer-diagnosis cancer-genomics cancer-research patient-management variant-analysis

Last synced: 7 months ago
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eVaianalyzer for human genomics

• Host: GitHub
• URL: https://github.com/ibchgenomic/evai-analyzer
• Owner: IBCHgenomic
• License: mit
• Created: 2025-03-13T10:42:46.000Z (7 months ago)
• Default Branch: main
• Last Pushed: 2025-03-25T10:28:12.000Z (7 months ago)
• Last Synced: 2025-03-25T11:30:28.792Z (7 months ago)
• Topics: cancer-diagnosis, cancer-genomics, cancer-research, patient-management, variant-analysis
• Language: Rust
• Homepage:
• Size: 831 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# eVai-analyzer

 - eVai-analyzer for open genomics.

 - It analyzes the eVai output files for variant annotation to filtering, preparating user reports and database and restapi human genomics.

 - **new version coming with lots of new features**

 

 ```

 cargo build

 ```

 ```

 variantannotator

 Usage: eVaianalyzer 

 Commands:

  variant-analyzer  analyzer for the variants

  variant-filter    filter the variants

  variant-database  create variant database

  gtf-analyze       analyze the corresponding gtf

  variant-seq       prepare the variant seq annotation

  download-genome   download the human genome

  acmg-transcript   variant-transcriptids

  sequence-profile  sequence profiling

  help              Print this message or the help of the given subcommand(s)

 Options:

  -h, --help     Print help

  -V, --version  Print version

 

 ibch/eVai-analyzer » ./target/debug/eVaianalyzer variant-analyzer ./data-repo/sample1.tsv ./data-repo/sampletest.tsv

 ibch/eVai-analyzer » ./target/debug/eVaianalyzer variant-filter ./data-repo/sample1.tsv ./data-repo/sampletest.tsv TTT

 ibch/eVai-analyzer » ./target/debug/eVaianalyzer analyzer ./data-repo/sample1.tsv ./data-repo/sampletest.tsv

 ibch/eVai-analyzer » ./target/debug/eVaianalyzer filter ./data-repo/sample1.tsv ./data-repo/sampletest.tsv TTT

 ibch/eVai-analyzer » ./target/debug/eVaianalyzer acmg-transcript ./data-repo/sample1.tsv 

 ibch/eVai-analyzer » ./target/debug/eVaianalyzer gtf-analyze ./data-repo/samplegtf.gtf

 ibch/eVai-analyzer » ./target/debug/eVaianalyzer download-genome yes

 ibch/eVai-analyzer » ./target/debug/eVaianalyzer sequence-profile ./data-repo/sample1.tsv ./data-repo/sample.fasta 10 10

 ibch/eVai-analyzer » ./target/debug/eVaianalyzer variant-seq ./data-repo/sample1.tsv ./data-repo/sample.fasta

 ```

 Gaurav Sablok \

 Instytut Chemii Bioorganicznej \

 Polskiej Akademii Nauk \

 ul. Noskowskiego 12/14 | 61-704, Poznań \

 Poland