https://github.com/icaoberg/singularity-r-base-biocmanager

Singularity recipe for r-base + BiocManager
https://github.com/icaoberg/singularity-r-base-biocmanager

singularity singularity-container

Last synced: about 1 month ago
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Singularity recipe for r-base + BiocManager

• Host: GitHub
• URL: https://github.com/icaoberg/singularity-r-base-biocmanager
• Owner: icaoberg
• Created: 2019-11-19T22:29:22.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2019-11-19T22:41:31.000Z (over 6 years ago)
• Last Synced: 2023-10-20T20:18:35.217Z (over 2 years ago)
• Topics: singularity, singularity-container
• Language: Shell
• Homepage: http://www.andrew.cmu.edu/~icaoberg
• Size: 1.95 KB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# README

![Release](https://img.shields.io/badge/release-prealpha-red.svg)

[![GitHub issues](https://img.shields.io/github/issues/icaoberg/singularity-r-base-biocmanager.svg)](https://github.com/icaoberg/singularity-r-base-biocmanager/issues)

[![GitHub forks](https://img.shields.io/github/forks/icaoberg/singularity-r-base-biocmanager.svg)](https://github.com/icaoberg/singularity-r-base-biocmanager/network)

[![GitHub stars](https://img.shields.io/github/stars/icaoberg/singularity-r-base-biocmanager.svg)](https://github.com/icaoberg/singularity-r-base-biocmanager/stargazers)

[![GitHub license](https://img.shields.io/badge/license-GPLv3-blue.svg)](https://www.gnu.org/licenses/quick-guide-gplv3.en.html)

This is the Singularity recipe to build an OpenSUSE 4.2 image with R v3.6.1 + BiocManager.

##  Building image

To build the image run

```

bash ./script.sh

```

## Requirements

Singularity v2.6+ is needed to build the container. However as of today, only version 2.6.0 will work on our department cluster.

## Disclaimer

[![Wold you buy me some coffee?](https://www.buymeacoffee.com/assets/img/custom_images/orange_img.png)](https://www.buymeacoffee.com/icaoberg)

I am nothing but a humble programmer creating the container for these wonderful apps.

---

[![CBD](http://www.cbd.cmu.edu/wp-content/uploads/2017/07/wordpress-default.png)](http://www.cbd.cmu.edu)

Copyleft © 2018-2019 [icaoberg](http://www.andrew.cmu.edu/~icaoberg) at the [Computational Biology Department](http://www.cbd.cmu.edu) in [Carnegie Mellon University](http://www.cmu.edu)