https://github.com/immunogenomics/earlylate_rna_eqtl

https://github.com/immunogenomics/earlylate_rna_eqtl

Last synced: 3 months ago
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• Host: GitHub
• URL: https://github.com/immunogenomics/earlylate_rna_eqtl
• Owner: immunogenomics
• License: gpl-3.0
• Created: 2025-02-05T17:59:37.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2025-02-18T20:44:22.000Z (over 1 year ago)
• Last Synced: 2025-09-02T03:51:02.982Z (9 months ago)
• Language: R
• Size: 23.4 KB
• Stars: 0
• Watchers: 10
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# EarlyLate_RNA_eQTL

A code repository for custom scripts used in the analyses described in our manuscript "**Early and late RNA eQTL are driven by different genetic mechanisms**" (Sakaue et al.)

### Table of Contents

- 01_eQTL: cis-eQTL mapping

- 02_finemap_coloc: finemapping and colocalization analyses between n-eQTL and c-eQTL

- 03_diff_enrich: differential enrichment analyses to characterize genomic annotations preferentially enriched for statistically fine-mapped variants in either n-eQTL or c-eQTL

- 04_disease_coloc: colocalization analyses between eQTL and disease GWAS (neuropsychiatric diseases)

### Contact

Questions can be sent to Saori Sakaue (ssakaue@broadinstitute.org)