https://github.com/immunogenomics/itc
Scripts to analyze innate T cell transcriptomes
https://github.com/immunogenomics/itc
Last synced: about 1 month ago
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Scripts to analyze innate T cell transcriptomes
- Host: GitHub
- URL: https://github.com/immunogenomics/itc
- Owner: immunogenomics
- License: gpl-3.0
- Created: 2019-01-15T15:01:35.000Z (over 7 years ago)
- Default Branch: master
- Last Pushed: 2019-02-08T16:40:12.000Z (over 7 years ago)
- Last Synced: 2025-06-27T18:43:24.456Z (about 1 year ago)
- Language: R
- Size: 32.2 KB
- Stars: 0
- Watchers: 12
- Forks: 0
- Open Issues: 0
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Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# itc
Scripts to analyze innate T cell transcriptomes from Gutierrez-Arcelus et al., Nature Communications, 2019 (doi.org/10.1038/s41467-019-08604-4).
In the low_input_rnaseq folder, you'll find a script to re-create the PCA that revealed the innateness gradient on PC1 (Fig. 2a-b).
In the single_cell_rnaseq folder, you'll find a script to re-create the PCA and UMAP of our single-cell RNA-seq data (Fig. 8b, Supplementary Fig. 15a)
Input files are available as Supplement Files in GEO with accession number GSE124731.