https://github.com/informaticsmatters/docker_nextflow
https://github.com/informaticsmatters/docker_nextflow
Last synced: 29 days ago
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- Host: GitHub
- URL: https://github.com/informaticsmatters/docker_nextflow
- Owner: InformaticsMatters
- Created: 2017-08-28T08:19:58.000Z (almost 9 years ago)
- Default Branch: master
- Last Pushed: 2025-11-26T12:49:19.000Z (7 months ago)
- Last Synced: 2025-11-29T10:53:24.493Z (7 months ago)
- Language: Dockerfile
- Size: 8.79 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 1
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Metadata Files:
- Readme: README.md
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README
# Nextflow
A Squonk-compliant [Nextflow] container image.
You can use Docker's build-args to build the image for a specific nextflow
release: -
$ V=20.07.1
$ docker build --build-arg NF_VERSION=$V -t informaticsmatters/nextflow:$V .
$ docker push informaticsmatters/nextflow:$V
## Runtime configuration
The container image behaviour is configured with a number of
environment variables: -
- `NF_REPORT_OPTIONS` Reporting options with a default value
of default `-with-trace`
- `NF_PROFILE_NAME` The name of the profile (defined in `nextflow-config`)
to execute. Docker execution would typically use the
default (`standard`) but OpenShift execution
would probably use `kubernetes`
- `NF_OPTIONS` Additional options passed to the nextflow command-line.
Default is an empty string (`''`)
- `NF_INIT_SCRIPT` The name of a pre-nextflow script to run,
default of `nextflow-init.sh`. The script has to be
injected into the work-directory of the container
(there isn't one by default).
The script is run if it is found to exist.
---
[nextflow]: https://www.nextflow.io