https://github.com/insightsoftwareconsortium/simpleitktutorialmiccai2015
SimpleITK tutorial at the 2015 MICCAI conference
https://github.com/insightsoftwareconsortium/simpleitktutorialmiccai2015
Last synced: 6 months ago
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SimpleITK tutorial at the 2015 MICCAI conference
- Host: GitHub
- URL: https://github.com/insightsoftwareconsortium/simpleitktutorialmiccai2015
- Owner: InsightSoftwareConsortium
- Created: 2015-09-25T03:55:00.000Z (over 10 years ago)
- Default Branch: master
- Last Pushed: 2015-10-14T17:20:09.000Z (over 10 years ago)
- Last Synced: 2025-07-27T08:35:49.525Z (6 months ago)
- Language: Python
- Homepage: http://www.itk.org/Wiki/SimpleITK/Tutorials/MICCAI2015
- Size: 5.49 MB
- Stars: 23
- Watchers: 30
- Forks: 17
- Open Issues: 2
-
Metadata Files:
- Readme: README.rst
Awesome Lists containing this project
README
|Circle CI|
.. |Circle CI| image:: https://circleci.com/gh/InsightSoftwareConsortium/SimpleITKTutorialMICCAI2015.svg?style=svg
:target: https://circleci.com/gh/InsightSoftwareConsortium/SimpleITKTutorialMICCAI2015
MICCAI 2015: An Interactive, Python-based Introduction to Registration with the Insight Toolkit (ITK)
=====================================================================================================
Organizers
----------
.. image:: http://www.itk.org/Wiki/images/thumb/b/b9/Nlm.jpg/60px-Nlm.jpg
:alt: National Library of Medicine
.. image:: http://www.itk.org/Wiki/images/thumb/0/07/Kitware.jpg/150px-Kitware.jpg
:alt: Kitware Inc.
.. image:: http://www.itk.org/Wiki/images/1/1e/Upenn.jpg
:alt: University of Pennsylvania
.. image:: http://www.itk.org/Wiki/images/4/43/Uofiowa.jpg
:alt: University of Iowa
.. image:: http://www.itk.org/Wiki/images/9/91/Uva.jpg
:alt: University of Virginia
|
- Brian Avants, University of Pennsylvania
- Hans Johnson, University of Iowa
- Bradley Lowekamp, Medical Science & Computing and National Institutes of Health
- Matthew McCormick, Kitware Inc
- Nick Tustison, University of Virginia
- Ziv Yaniv, TAJ Technologies Inc. and National Institutes of Health
Who Should Attend
-----------------
- Do you want your students to gain practical experience with
registration while minimizing their programming load?
- Do you want to easily experiment with various ITK registration
configurations, or optimize the settings of a specific registration
configuration?
If you answered yes to either of these questions, then this tutorial is
for you.
The goal of this half-day tutorial is to introduce students and
researchers to SimpleITK’s interface for the ITK version 4 registration
framework. SimpleITK is, as the name suggests, a simpler interface to
ITK. It provides a procedural interface and bindings to several
interpreted languages, facilitating fast experimentation with ITK
algorithms. In this tutorial we will use the Python programming language
and the IPython Notebook interactive environment to explore the various
features of the ITKv4 registration framework. Key features presented
include: uniform treatment of linear, deformable and composite
transformations, embedded multi-resolution registration and self
calibrating optimizers. Using a hands on approach, participants will
experiment with various registration tasks, learning how to use
SimpleITK.
Program
-------
1. *08:30am:* `Setup and
introduction <1_Setup_and_introduction.ipynb>`__ *Matthew McCormick
and Hans Johnson*
2. *09:00am:* `SimpleITK basics <2_SimpleITK_basics.ipynb>`__: loading
data, image access, image transformations, image resampling, basic
filters *Matthew McCormick*
3. *10:00am:* The ITKv4 registration framework *Nick
Tustison and Brian Avants*
4. *10:30am:* Coffee break.
5. *10:45am:* `Registration 1 <3_Registration_1.ipynb>`__: composite
transform, transformation initialization, embedded multi-resolution,
scale parameter estimation, optimization termination criteria *Ziv
Yaniv*
6. *11:30am:* `Registration 2 <4_Registration_2.ipynb>`__: nonrigid
registration, Bspline and displacement field transformations *Ziv
Yaniv*
7. *12:30pm:* Lunch.