https://github.com/intermine/interminer-workshop
InterMineR exercises for training workshops
https://github.com/intermine/interminer-workshop
Last synced: 15 days ago
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InterMineR exercises for training workshops
- Host: GitHub
- URL: https://github.com/intermine/interminer-workshop
- Owner: intermine
- Created: 2019-06-13T12:56:09.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2020-07-19T12:47:23.000Z (over 5 years ago)
- Last Synced: 2025-03-07T11:51:56.440Z (10 months ago)
- Language: Jupyter Notebook
- Size: 412 KB
- Stars: 1
- Watchers: 0
- Forks: 1
- Open Issues: 3
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# InterMineR Workshop use-case, 2019
## To run on Binder (no setup required):
[](https://mybinder.org/v2/gh/intermine/interminer-workshop/master)
## To run locally, we assume you have:
### For the Pax6 Workshop workflows:
- [Jupyter Notebook](https://jupyter.readthedocs.io/en/latest/install.html) installed
- an [R kernel](https://irkernel.github.io/installation/) available
- the [InterMineR R package](https://bioconductor.org/packages/release/bioc/html/InterMineR.html) installed.
### For the Enrichment and Visualisations:
- all of the items in the previous list, PLUS
- See install.R for additional dependencies. You may wish to install them with BiocManager if you have a recent version of R (rather than BiocLite)
One these are all set up, clone this repo
```bash
https://github.com/intermine/interminer-workshop.git
```
Then move to the newly cloned directory, and run jupyter notebook:
```bash
cd interminer-workshop
jupyter notebook
```
## Questions, queries, comments?
Feel free to [open an issue](https://github.com/intermine/interminer-workshop/issues) or [contact us](http://intermine.org/contact/)