https://github.com/janeliascicomp/funkeannotation

Small tool to annotate images
https://github.com/janeliascicomp/funkeannotation

Last synced: 4 months ago
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Small tool to annotate images

• Host: GitHub
• URL: https://github.com/janeliascicomp/funkeannotation
• Owner: JaneliaSciComp
• Created: 2024-11-15T17:13:04.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2025-03-24T22:22:06.000Z (11 months ago)
• Last Synced: 2025-03-24T23:24:37.046Z (11 months ago)
• Language: Java
• Size: 68.4 KB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

          
![example workflow](https://github.com/JaneliaSciComp/FunkeAnnotation/actions/workflows/maven.yml/badge.svg)

Small tool for annotating images.

**Installation:**

- download from [releases](https://github.com/JaneliaSciComp/FunkeAnnotation/releases) or build the tool using Maven `mvn clean package`

- copy the JAR file to the Fiji plugins directory

- the plugin will show up under Fiji > Plugins > Funke lab > Annotator ...

**Running in Phase 1:**

- upon start it will ask for a directory that has to contain directories 'A', 'B', 'M'

- each directory has to contain a series of png's [0...N].png



**Running in Phase 2:**

- you need to additionally specify a JSON that contains the description of all features that can be annotated, e.g.:

```

{

    "DCV appearance": {

        "-1": "One or more DCV has disappeared in B",

        "0": "The same number of DCVs are present in B as in A",

        "1": "One or more DCV has appeared in B"

    }, 

    "DCV size": {

        "-1": "One or more DCVs in B are smaller than in A",

        "0": "One or more DCVs in B are the same size as in A",

        "1": "One or more DCVs in B are larger than in A"

    }

}

```