https://github.com/janeliascicomp/jrclust

JRCLUST
https://github.com/janeliascicomp/jrclust

cluster rocket sorting spike

Last synced: 4 months ago
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JRCLUST

• Host: GitHub
• URL: https://github.com/janeliascicomp/jrclust
• Owner: JaneliaSciComp
• License: apache-2.0
• Created: 2017-09-25T21:54:18.000Z (over 7 years ago)
• Default Branch: main
• Last Pushed: 2024-05-01T13:33:28.000Z (9 months ago)
• Last Synced: 2024-10-09T20:41:21.845Z (4 months ago)
• Topics: cluster, rocket, sorting, spike
• Language: MATLAB
• Homepage:
• Size: 78.9 MB
• Stars: 34
• Watchers: 10
• Forks: 22
• Open Issues: 36
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.TXT
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md

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README

        
# JRCLUST

## Note

**JRCLUST is no longer being actively maintained.**

If you still want to use JRCLUST, we recommend using the [latest release](https://github.com/JaneliaSciComp/JRCLUST/releases/tag/v4.1.0) or cloning from `main`, rather than `master`.

JRCLUST is a scalable and customizable package for spike sorting on [high-density silicon probes](https://www.nature.com/articles/nature24636).

It is written in MATLAB and CUDA.

JRCLUST was originally developed by [James Jun](https://www.simonsfoundation.org/team/james-jun/).

## Installing JRCLUST

If you'd like to

test the latest development code, you can [clone the

repository](https://help.github.com/articles/cloning-a-repository/) to

your computer. If you want to stay on a release, head to the [releases

page](https://github.com/JaneliaSciComp/JRCLUST/releases) and download

the latest release.

Run the following command in MATLAB (you may want to add it to your [startup

script](https://www.mathworks.com/help/matlab/ref/startup.html)):

```matlab

addpath('/path/to/JRCLUST');

```

You may also need to recompile your CUDA codes if you're not on Windows.

Do this with

```matlab

jrclust.CUDA.compileCUDA();

```

## Questions?

Read the documentation [here](https://jrclust.readthedocs.io/en/latest/index.html) and the original bioRxiv paper [here](https://www.biorxiv.org/content/early/2017/01/30/101030).

Still have questions?

Visit our [Gitter community](https://gitter.im/JRCLUST/community) and ask!