https://github.com/jasterv/sarscov-hierarchy
The goal of this project is to read and analize RNA sequences of the Sars-Covid-2 virus around the world and build a hierarchy tree by implementing a hierarchical clustering algorithm
https://github.com/jasterv/sarscov-hierarchy
Last synced: 8 months ago
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The goal of this project is to read and analize RNA sequences of the Sars-Covid-2 virus around the world and build a hierarchy tree by implementing a hierarchical clustering algorithm
- Host: GitHub
- URL: https://github.com/jasterv/sarscov-hierarchy
- Owner: JasterV
- License: unlicense
- Created: 2020-04-22T15:35:41.000Z (about 6 years ago)
- Default Branch: master
- Last Pushed: 2020-11-10T00:46:59.000Z (over 5 years ago)
- Last Synced: 2025-03-07T21:32:58.024Z (over 1 year ago)
- Language: Python
- Homepage:
- Size: 71 MB
- Stars: 3
- Watchers: 2
- Forks: 1
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# Welcome to the Sarscov Hierarchy Project 👋
[](#-contributors-)
> The goal of this project is to read and analize RNA sequences of the Sars-Covid-2 virus around the world and build a hierarchy tree implementing a hierarchical clustering algorithm
### 🏠 [Homepage](https://github.com/JasterV/COVID-19-CHALLENGE)
### Install Dependencies
```
pip install -r requeriments.txt 📝
```
### ✨ Execute
You must install the sequences.fasta and sequences.csv files from the [NCBI official database](https://www.ncbi.nlm.nih.gov/labs/virus/vssi/#/virus?VirusLineage_ss=Severe%20acute%20respiratory%20syndrome%20coronavirus%202%20(SARS-CoV-2),%20taxid:2697049&SeqType_s=Nucleotide) to execute this project.
We provide you a .zip file with 2 other fasta and csv files to try out without downloading anything so, have fun!
```
python src/main/sarscovhierarchy.py
```
### Full Code Documentation
[Python Code Documentation](https://manudiv16.github.io/Covid-19-challenge)
[Rust Code Documentation](https://jasterv.github.io/rust-covid-docs/)
## 👤 Contributors ✨
## Show your support
Give us a ⭐️ if you like this project!
